RNA–Protein interactions for RNA: ENST00000354547.7

COL13A1-201, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 3,027 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-201ENST00000354547 NESP48681 1621 aa28.44■■■□□ 2.14
COL13A1-201ENST00000354547 TIAM1Q13009 1591 aa28.43■■■□□ 2.14
COL13A1-201ENST00000354547 PHLDB1Q86UU1 1377 aa28.42■■■□□ 2.14
COL13A1-201ENST00000354547 FHOD3Q2V2M9 1422 aa28.39■■■□□ 2.14
COL13A1-201ENST00000354547 LRRC9Q6ZRR7 1453 aa28.38■■■□□ 2.13
COL13A1-201ENST00000354547 SIN3AQ96ST3 1273 aa28.33■■■□□ 2.13
COL13A1-201ENST00000354547 FHAD1B1AJZ9 1412 aa28.33■■■□□ 2.12
COL13A1-201ENST00000354547 POLA1P09884 1462 aaPredicted RBP28.32■■■□□ 2.12
COL13A1-201ENST00000354547 TOPBP1Q92547 1522 aa28.29■■■□□ 2.12
COL13A1-201ENST00000354547 SETD5Q9C0A6 1442 aa28.29■■■□□ 2.12
COL13A1-201ENST00000354547 PCF11O94913 1555 aaKnown RBP28.28■■■□□ 2.12
COL13A1-201ENST00000354547 DNMBPQ6XZF7 1577 aa28.26■■■□□ 2.11
COL13A1-201ENST00000354547 MAP3K1Q13233 1512 aa28.24■■■□□ 2.11
COL13A1-201ENST00000354547 TDRD9Q8NDG6 1382 aaKnown RBP28.23■■■□□ 2.11
COL13A1-201ENST00000354547 ABCA10Q8WWZ4 1543 aa28.22■■■□□ 2.11
COL13A1-201ENST00000354547 MAPKBP1O60336 1514 aa28.21■■■□□ 2.11
COL13A1-201ENST00000354547 DNAJC5BQ9UF47 199 aa28.21■■■□□ 2.11
COL13A1-201ENST00000354547 HIRIP3Q9BW71 556 aaPredicted RBP28.15■■■□□ 2.1
COL13A1-201ENST00000354547 KCNH8Q96L42 1107 aa28.13■■■□□ 2.09
COL13A1-201ENST00000354547 CFAP43Q8NDM7 1665 aa28.09■■■□□ 2.09
COL13A1-201ENST00000354547 URB2Q14146 1524 aaKnown RBP28.09■■■□□ 2.09
COL13A1-201ENST00000354547 CASKIN1Q8WXD9 1431 aa28.08■■■□□ 2.09
COL13A1-201ENST00000354547 DDX10Q13206 875 aaKnown RBP28.08■■■□□ 2.09
COL13A1-201ENST00000354547 FYCO1Q9BQS8 1478 aa28.07■■■□□ 2.08
COL13A1-201ENST00000354547 MTUS2Q5JR59 1369 aa28.07■■■□□ 2.08
COL13A1-201ENST00000354547 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
COL13A1-201ENST00000354547 EFCAB5A4FU69 1503 aa28.02■■■□□ 2.08
COL13A1-201ENST00000354547 CUL7Q14999 1698 aa28.01■■■□□ 2.07
COL13A1-201ENST00000354547 FMN1Q68DA7 1419 aa28.01■■■□□ 2.07
COL13A1-201ENST00000354547 CTTNBP2Q8WZ74 1663 aa27.98■■■□□ 2.07
COL13A1-201ENST00000354547 GAPVD1Q14C86 1478 aa27.97■■■□□ 2.07
COL13A1-201ENST00000354547 ARID3CA6NKF2 412 aa27.97■■■□□ 2.07
COL13A1-201ENST00000354547 FGD6Q6ZV73 1430 aa27.95■■■□□ 2.07
COL13A1-201ENST00000354547 AQRO60306 1485 aaKnown RBP eCLIP27.92■■■□□ 2.06
COL13A1-201ENST00000354547 LAMC3Q9Y6N6 1575 aa27.91■■■□□ 2.06
COL13A1-201ENST00000354547 SNAPC4Q5SXM2 1469 aa27.9■■■□□ 2.06
COL13A1-201ENST00000354547 PPP1R15AO75807 674 aaPredicted RBP27.89■■■□□ 2.06
COL13A1-201ENST00000354547 PDS5BQ9NTI5 1447 aa27.89■■■□□ 2.05
COL13A1-201ENST00000354547 SUPT16HQ9Y5B9 1047 aaKnown RBP27.88■■■□□ 2.05
COL13A1-201ENST00000354547 CHIC2Q9UKJ5 165 aa27.88■■■□□ 2.05
COL13A1-201ENST00000354547 PTPRKQ15262 1439 aa27.87■■■□□ 2.05
COL13A1-201ENST00000354547 TONSLQ96HA7 1378 aa27.83■■■□□ 2.05
COL13A1-201ENST00000354547 RRP7BPQ9NSQ0 103 aa27.83■■■□□ 2.05
COL13A1-201ENST00000354547 CCDC18Q5T9S5 1454 aa27.82■■■□□ 2.04
COL13A1-201ENST00000354547 NCOA2Q15596 1464 aa27.82■■■□□ 2.04
COL13A1-201ENST00000354547 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.81■■■□□ 2.04
COL13A1-201ENST00000354547 ABCA5Q8WWZ7 1642 aa27.81■■■□□ 2.04
COL13A1-201ENST00000354547 TIMELESSQ9UNS1 1208 aa27.79■■■□□ 2.04
COL13A1-201ENST00000354547 MYOM3Q5VTT5 1437 aa27.76■■■□□ 2.03
COL13A1-201ENST00000354547 KIF21AQ7Z4S6 1674 aa27.75■■■□□ 2.03
COL13A1-201ENST00000354547 LRRIQ1Q96JM4 1722 aa27.75■■■□□ 2.03
COL13A1-201ENST00000354547 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
COL13A1-201ENST00000354547 SAMD9Q5K651 1589 aa27.74■■■□□ 2.03
COL13A1-201ENST00000354547 TRIM52Q96A61 297 aa27.73■■■□□ 2.03
COL13A1-201ENST00000354547 HFM1A2PYH4 1435 aa27.71■■■□□ 2.03
COL13A1-201ENST00000354547 NAIPQ13075 1403 aa27.7■■■□□ 2.02
COL13A1-201ENST00000354547 BCANQ96GW7 911 aa27.69■■■□□ 2.02
COL13A1-201ENST00000354547 UACAQ9BZF9 1416 aa27.68■■■□□ 2.02
COL13A1-201ENST00000354547 ANP32CO43423 234 aa27.67■■■□□ 2.02
COL13A1-201ENST00000354547 PTPN23Q9H3S7 1636 aa27.67■■■□□ 2.02
COL13A1-201ENST00000354547 MAGI3Q5TCQ9 1506 aa27.65■■■□□ 2.02
COL13A1-201ENST00000354547 SUPT6HQ7KZ85 1726 aaKnown RBP27.64■■■□□ 2.02
COL13A1-201ENST00000354547 TARBP1Q13395 1621 aaKnown RBP27.61■■■□□ 2.01
COL13A1-201ENST00000354547 EHBP1L1Q8N3D4 1523 aa27.61■■■□□ 2.01
COL13A1-201ENST00000354547 FOXD1Q16676 465 aa27.58■■■□□ 2.01
COL13A1-201ENST00000354547 CDK13Q14004 1512 aaKnown RBP27.57■■■□□ 2
COL13A1-201ENST00000354547 UGGT2Q9NYU1 1516 aa27.56■■■□□ 2
COL13A1-201ENST00000354547 FKBP8Q14318 412 aa27.55■■■□□ 2
COL13A1-201ENST00000354547 THOC2Q8NI27 1593 aaKnown RBP27.51■■□□□ 1.99
COL13A1-201ENST00000354547 EPRSP07814 1512 aaKnown RBP27.51■■□□□ 1.99
COL13A1-201ENST00000354547 IQGAP2Q13576 1575 aa27.51■■□□□ 1.99
COL13A1-201ENST00000354547 PBRM1Q86U86 1689 aa27.48■■□□□ 1.99
COL13A1-201ENST00000354547 ZNF608Q9ULD9 1512 aaPredicted RBP27.46■■□□□ 1.99
COL13A1-201ENST00000354547 CCER2I3L3R5 266 aa27.46■■□□□ 1.99
COL13A1-201ENST00000354547 HECW1Q76N89 1606 aa27.46■■□□□ 1.99
COL13A1-201ENST00000354547 MPHOSPH9Q99550 1183 aa27.46■■□□□ 1.99
COL13A1-201ENST00000354547 ZNF644Q9H582 1327 aaPredicted RBP27.45■■□□□ 1.98
COL13A1-201ENST00000354547 HSPA5P11021 654 aaKnown RBP27.44■■□□□ 1.98
COL13A1-201ENST00000354547 ARHGEF11O15085 1522 aa27.43■■□□□ 1.98
COL13A1-201ENST00000354547 KDM6BO15054 1643 aa27.42■■□□□ 1.98
COL13A1-201ENST00000354547 MRC2Q9UBG0 1479 aa27.41■■□□□ 1.98
COL13A1-201ENST00000354547 ADAMTS12P58397 1594 aa27.41■■□□□ 1.98
COL13A1-201ENST00000354547 FBLN2P98095 1184 aa27.39■■□□□ 1.98
COL13A1-201ENST00000354547 L3MBTL2Q969R5 705 aa27.38■■□□□ 1.97
COL13A1-201ENST00000354547 TSHZ2Q9NRE2 1034 aa27.38■■□□□ 1.97
COL13A1-201ENST00000354547 NEFLP07196 543 aa27.37■■□□□ 1.97
COL13A1-201ENST00000354547 TCOF1Q13428 1488 aaKnown RBP27.37■■□□□ 1.97
COL13A1-201ENST00000354547 DENND4BO75064 1496 aaPredicted RBP27.36■■□□□ 1.97
COL13A1-201ENST00000354547 KDM5BQ9UGL1 1544 aa27.35■■□□□ 1.97
COL13A1-201ENST00000354547 WASHC2AQ641Q2 1341 aa27.34■■□□□ 1.97
COL13A1-201ENST00000354547 WDR62O43379 1518 aa27.34■■□□□ 1.97
COL13A1-201ENST00000354547 EIF4G2P78344 907 aaKnown RBP eCLIP27.33■■□□□ 1.97
COL13A1-201ENST00000354547 ZNF777Q9ULD5 760 aaPredicted RBP27.33■■□□□ 1.96
COL13A1-201ENST00000354547 MIA2Q96PC5 1412 aa27.31■■□□□ 1.96
COL13A1-201ENST00000354547 HNRNPUQ00839 825 aaKnown RBP eCLIP27.3■■□□□ 1.96
COL13A1-201ENST00000354547 SLC4A1APQ9BWU0 796 aaKnown RBP27.29■■□□□ 1.96
COL13A1-201ENST00000354547 GCC2Q8IWJ2 1684 aa27.26■■□□□ 1.95
COL13A1-201ENST00000354547 CHMP7Q8WUX9 453 aaPredicted RBP27.26■■□□□ 1.95
COL13A1-201ENST00000354547 CDK11AQ9UQ88 783 aaPredicted RBP27.26■■□□□ 1.95
COL13A1-201ENST00000354547 DAPK1P53355 1430 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms