RNA–Protein interactions for RNA: ENST00000349225.2

RLIM-202, Transcript of ring finger protein, LIM domain interacting, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RLIM, Length 3,478 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RLIM-202ENST00000349225 CCNB3Q8WWL7 1395 aa20.09■□□□□ 0.81
RLIM-202ENST00000349225 CCER2I3L3R5 266 aa20.08■□□□□ 0.81
RLIM-202ENST00000349225 SIN3AQ96ST3 1273 aa20.08■□□□□ 0.8
RLIM-202ENST00000349225 ERICH6Q7L0X2 663 aa20.06■□□□□ 0.8
RLIM-202ENST00000349225 ANO8Q9HCE9 1232 aaPredicted RBP20.03■□□□□ 0.8
RLIM-202ENST00000349225 PRDM2Q13029 1718 aa20.03■□□□□ 0.8
RLIM-202ENST00000349225 CDK11AQ9UQ88 783 aaPredicted RBP20.03■□□□□ 0.8
RLIM-202ENST00000349225 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.8
RLIM-202ENST00000349225 ANP32CO43423 234 aa19.98■□□□□ 0.79
RLIM-202ENST00000349225 PRXQ9BXM0 1461 aa19.94■□□□□ 0.78
RLIM-202ENST00000349225 MYT1LQ9UL68 1186 aa19.92■□□□□ 0.78
RLIM-202ENST00000349225 ERICH3Q5RHP9 1530 aa19.92■□□□□ 0.78
RLIM-202ENST00000349225 PAK3O75914 559 aaPredicted RBP19.9■□□□□ 0.78
RLIM-202ENST00000349225 SETD5Q9C0A6 1442 aa19.9■□□□□ 0.78
RLIM-202ENST00000349225 HNRNPUQ00839 825 aaKnown RBP eCLIP19.88■□□□□ 0.77
RLIM-202ENST00000349225 NBR1Q14596 966 aa19.88■□□□□ 0.77
RLIM-202ENST00000349225 SALL2Q9Y467 1007 aaPredicted RBP19.86■□□□□ 0.77
RLIM-202ENST00000349225 TOP2BQ02880 1626 aa19.86■□□□□ 0.77
RLIM-202ENST00000349225 ARHGAP35Q9NRY4 1499 aa19.85■□□□□ 0.77
RLIM-202ENST00000349225 CC2D2AQ9P2K1 1620 aa19.85■□□□□ 0.77
RLIM-202ENST00000349225 PPP4R2Q9NY27 417 aa19.81■□□□□ 0.76
RLIM-202ENST00000349225 B4GALNT3Q6L9W6 998 aa19.81■□□□□ 0.76
RLIM-202ENST00000349225 NOP58Q9Y2X3 529 aaKnown RBP19.81■□□□□ 0.76
RLIM-202ENST00000349225 PHLDB1Q86UU1 1377 aa19.77■□□□□ 0.76
RLIM-202ENST00000349225 TIMELESSQ9UNS1 1208 aa19.76■□□□□ 0.75
RLIM-202ENST00000349225 BIVM-ERCC5R4GMW8 1640 aa19.76■□□□□ 0.75
RLIM-202ENST00000349225 CCDC184Q52MB2 194 aa19.75■□□□□ 0.75
RLIM-202ENST00000349225 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
RLIM-202ENST00000349225 ERICH6BQ5W0A0 696 aa19.74■□□□□ 0.75
RLIM-202ENST00000349225 IL27Q8NEV9 243 aa19.73■□□□□ 0.75
RLIM-202ENST00000349225 CCDC136Q96JN2 1154 aa19.71■□□□□ 0.75
RLIM-202ENST00000349225 CFTRP13569 1480 aa19.68■□□□□ 0.74
RLIM-202ENST00000349225 FAM50AQ14320 339 aaKnown RBP19.67■□□□□ 0.74
RLIM-202ENST00000349225 LRRC9Q6ZRR7 1453 aa19.66■□□□□ 0.74
RLIM-202ENST00000349225 KDM5BQ9UGL1 1544 aa19.64■□□□□ 0.74
RLIM-202ENST00000349225 MAP3K1Q13233 1512 aa19.63■□□□□ 0.73
RLIM-202ENST00000349225 WASHC2AQ641Q2 1341 aa19.62■□□□□ 0.73
RLIM-202ENST00000349225 RTN4Q9NQC3 1192 aaKnown RBP19.62■□□□□ 0.73
RLIM-202ENST00000349225 TONSLQ96HA7 1378 aa19.59■□□□□ 0.73
RLIM-202ENST00000349225 IPO9Q96P70 1041 aaKnown RBP19.57■□□□□ 0.72
RLIM-202ENST00000349225 CUX1P39880 1505 aa19.56■□□□□ 0.72
RLIM-202ENST00000349225 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.55■□□□□ 0.72
RLIM-202ENST00000349225 FHAD1B1AJZ9 1412 aa19.55■□□□□ 0.72
RLIM-202ENST00000349225 KIF27Q86VH2 1401 aa19.53■□□□□ 0.72
RLIM-202ENST00000349225 FAM9BQ8IZU0 186 aa19.53■□□□□ 0.72
RLIM-202ENST00000349225 ZBED9Q6R2W3 1325 aa19.51■□□□□ 0.71
RLIM-202ENST00000349225 CFAP43Q8NDM7 1665 aa19.51■□□□□ 0.71
RLIM-202ENST00000349225 NCOA2Q15596 1464 aa19.51■□□□□ 0.71
RLIM-202ENST00000349225 AKNAQ7Z591 1439 aa19.5■□□□□ 0.71
RLIM-202ENST00000349225 HSPA5P11021 654 aaKnown RBP19.5■□□□□ 0.71
RLIM-202ENST00000349225 RTL5Q5HYW3 569 aaPredicted RBP19.49■□□□□ 0.71
RLIM-202ENST00000349225 AQRO60306 1485 aaKnown RBP eCLIP19.48■□□□□ 0.712e-7■■□□□ 12
RLIM-202ENST00000349225 C11orf95C9JLR9 678 aaPredicted RBP19.48■□□□□ 0.71
RLIM-202ENST00000349225 ZBTB47Q9UFB7 747 aaPredicted RBP19.47■□□□□ 0.71
RLIM-202ENST00000349225 PCF11O94913 1555 aaKnown RBP19.46■□□□□ 0.71
RLIM-202ENST00000349225 ANP32AP39687 249 aaKnown RBP19.46■□□□□ 0.71
RLIM-202ENST00000349225 CCDC18Q5T9S5 1454 aa19.46■□□□□ 0.71
RLIM-202ENST00000349225 PRKRIP1Q9H875 184 aaPredicted RBP19.46■□□□□ 0.71
RLIM-202ENST00000349225 CNTLNQ9NXG0 1405 aa19.46■□□□□ 0.71
RLIM-202ENST00000349225 PTPRKQ15262 1439 aa19.46■□□□□ 0.71
RLIM-202ENST00000349225 UACAQ9BZF9 1416 aa19.43■□□□□ 0.7
RLIM-202ENST00000349225 LAMC3Q9Y6N6 1575 aa19.43■□□□□ 0.7
RLIM-202ENST00000349225 MRS2Q9HD23 443 aa19.42■□□□□ 0.7
RLIM-202ENST00000349225 UBE2Q2Q8WVN8 375 aa19.4■□□□□ 0.7
RLIM-202ENST00000349225 RNF123Q5XPI4 1314 aa19.39■□□□□ 0.7
RLIM-202ENST00000349225 PTPN23Q9H3S7 1636 aa19.39■□□□□ 0.69
RLIM-202ENST00000349225 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
RLIM-202ENST00000349225 HFM1A2PYH4 1435 aa19.37■□□□□ 0.69
RLIM-202ENST00000349225 SMG6Q86US8 1419 aaKnown RBP19.37■□□□□ 0.69
RLIM-202ENST00000349225 IGF1RP08069 1367 aa19.37■□□□□ 0.69
RLIM-202ENST00000349225 P3H3Q8IVL6 736 aa19.36■□□□□ 0.69
RLIM-202ENST00000349225 LAS1LQ9Y4W2 734 aaKnown RBP19.36■□□□□ 0.69
RLIM-202ENST00000349225 WASHC2CQ9Y4E1 1318 aa19.36■□□□□ 0.69
RLIM-202ENST00000349225 CADPSQ9ULU8 1353 aa19.35■□□□□ 0.69
RLIM-202ENST00000349225 DENND4BO75064 1496 aaPredicted RBP19.35■□□□□ 0.69
RLIM-202ENST00000349225 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
RLIM-202ENST00000349225 CCDC7Q96M83 1385 aa19.33■□□□□ 0.68
RLIM-202ENST00000349225 NAIPQ13075 1403 aa19.33■□□□□ 0.68
RLIM-202ENST00000349225 FGD6Q6ZV73 1430 aa19.33■□□□□ 0.68
RLIM-202ENST00000349225 NEFMP07197 916 aa19.33■□□□□ 0.68
RLIM-202ENST00000349225 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.68
RLIM-202ENST00000349225 SENP3-EIF4A1A0A087X0R7 540 aa19.32■□□□□ 0.68
RLIM-202ENST00000349225 BRPF3Q9ULD4 1205 aa19.31■□□□□ 0.68
RLIM-202ENST00000349225 EIF4G2P78344 907 aaKnown RBP eCLIP19.3■□□□□ 0.68
RLIM-202ENST00000349225 NPM2Q86SE8 214 aaKnown RBP19.3■□□□□ 0.68
RLIM-202ENST00000349225 NUDCQ9Y266 331 aa19.28■□□□□ 0.68
RLIM-202ENST00000349225 FHOD3Q2V2M9 1422 aa19.27■□□□□ 0.67
RLIM-202ENST00000349225 CARMIL1Q5VZK9 1371 aa19.24■□□□□ 0.67
RLIM-202ENST00000349225 DNMBPQ6XZF7 1577 aa19.24■□□□□ 0.67
RLIM-202ENST00000349225 USP35Q9P2H5 1018 aa19.23■□□□□ 0.67
RLIM-202ENST00000349225 FYCO1Q9BQS8 1478 aa19.22■□□□□ 0.67
RLIM-202ENST00000349225 KIF7Q2M1P5 1343 aa19.22■□□□□ 0.67
RLIM-202ENST00000349225 L3MBTL2Q969R5 705 aa19.2■□□□□ 0.66
RLIM-202ENST00000349225 ABCA5Q8WWZ7 1642 aa19.19■□□□□ 0.66
RLIM-202ENST00000349225 KIF21AQ7Z4S6 1674 aa19.19■□□□□ 0.66
RLIM-202ENST00000349225 CASKIN1Q8WXD9 1431 aa19.19■□□□□ 0.66
RLIM-202ENST00000349225 PDE4AP27815 886 aa19.19■□□□□ 0.66
RLIM-202ENST00000349225 KDM6BO15054 1643 aa19.18■□□□□ 0.66
RLIM-202ENST00000349225 FMN1Q68DA7 1419 aa19.18■□□□□ 0.66
RLIM-202ENST00000349225 NBPF8Q3BBV2 869 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms