RNA–Protein interactions for RNA: ENST00000346569.6

ECM1-201, Transcript of extracellular matrix protein 1, humanhuman

TSL 1 (best) BASIC

Gene ECM1, Length 1,444 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-201ENST00000346569 CHMP7Q8WUX9 453 aaPredicted RBP17.3■□□□□ 0.36
ECM1-201ENST00000346569 SYNJ2O15056 1496 aa17.3■□□□□ 0.36
ECM1-201ENST00000346569 GRIN2AQ12879 1464 aa17.28■□□□□ 0.36
ECM1-201ENST00000346569 ARAP1Q96P48 1450 aa17.28■□□□□ 0.36
ECM1-201ENST00000346569 VPS8Q8N3P4 1428 aa17.28■□□□□ 0.36
ECM1-201ENST00000346569 CTTNBP2Q8WZ74 1663 aa17.26■□□□□ 0.35
ECM1-201ENST00000346569 KIAA0586Q9BVV6 1533 aa17.23■□□□□ 0.35
ECM1-201ENST00000346569 FBLN2P98095 1184 aa17.22■□□□□ 0.35
ECM1-201ENST00000346569 NUP160Q12769 1436 aa17.2■□□□□ 0.34
ECM1-201ENST00000346569 P3H3Q8IVL6 736 aa17.2■□□□□ 0.34
ECM1-201ENST00000346569 EFCAB5A4FU69 1503 aa17.19■□□□□ 0.34
ECM1-201ENST00000346569 CHD1O14646 1710 aa17.19■□□□□ 0.34
ECM1-201ENST00000346569 IQGAP2Q13576 1575 aa17.17■□□□□ 0.34
ECM1-201ENST00000346569 CEP170Q5SW79 1584 aa17.16■□□□□ 0.34
ECM1-201ENST00000346569 UGGT2Q9NYU1 1516 aa17.15■□□□□ 0.34
ECM1-201ENST00000346569 RIMBP3CA6NJZ7 1639 aa17.15■□□□□ 0.34
ECM1-201ENST00000346569 RIMBP3BA6NNM3 1639 aa17.15■□□□□ 0.34
ECM1-201ENST00000346569 RIMBP3Q9UFD9 1639 aa17.15■□□□□ 0.34
ECM1-201ENST00000346569 SAMD9Q5K651 1589 aa17.14■□□□□ 0.34
ECM1-201ENST00000346569 PPARGC1BQ86YN6 1023 aaKnown RBP17.14■□□□□ 0.33
ECM1-201ENST00000346569 FHOD3Q2V2M9 1422 aa17.14■□□□□ 0.33
ECM1-201ENST00000346569 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
ECM1-201ENST00000346569 JPH4Q96JJ6 628 aa17.13■□□□□ 0.33
ECM1-201ENST00000346569 ARHGEF11O15085 1522 aa17.12■□□□□ 0.33
ECM1-201ENST00000346569 APLP2Q06481 763 aa17.09■□□□□ 0.33
ECM1-201ENST00000346569 DISP1Q96F81 1524 aa17.08■□□□□ 0.32
ECM1-201ENST00000346569 FMN1Q68DA7 1419 aa17.08■□□□□ 0.32
ECM1-201ENST00000346569 PCGF6Q9BYE7 350 aa17.05■□□□□ 0.32
ECM1-201ENST00000346569 CASKIN1Q8WXD9 1431 aa17.04■□□□□ 0.32
ECM1-201ENST00000346569 CLASP1Q7Z460 1538 aa17.04■□□□□ 0.32
ECM1-201ENST00000346569 KANK4Q5T7N3 995 aaPredicted RBP17.03■□□□□ 0.32
ECM1-201ENST00000346569 MAP3K1Q13233 1512 aa17.03■□□□□ 0.32
ECM1-201ENST00000346569 KIAA0556O60303 1618 aa17■□□□□ 0.31
ECM1-201ENST00000346569 FYCO1Q9BQS8 1478 aa16.99■□□□□ 0.31
ECM1-201ENST00000346569 CARMIL2Q6F5E8 1435 aa16.99■□□□□ 0.31
ECM1-201ENST00000346569 PCF11O94913 1555 aaKnown RBP16.97■□□□□ 0.31
ECM1-201ENST00000346569 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.3
ECM1-201ENST00000346569 TTBK1Q5TCY1 1321 aaPredicted RBP16.95■□□□□ 0.3
ECM1-201ENST00000346569 PRG4Q92954 1404 aaPredicted RBP16.95■□□□□ 0.3
ECM1-201ENST00000346569 TIAM1Q13009 1591 aa16.93■□□□□ 0.3
ECM1-201ENST00000346569 SHROOM2Q13796 1616 aa16.93■□□□□ 0.3
ECM1-201ENST00000346569 LRRC9Q6ZRR7 1453 aa16.91■□□□□ 0.3
ECM1-201ENST00000346569 CYB5RLQ6IPT4 315 aa16.88■□□□□ 0.29
ECM1-201ENST00000346569 PTPRGP23470 1445 aa16.86■□□□□ 0.29
ECM1-201ENST00000346569 CFAP43Q8NDM7 1665 aa16.85■□□□□ 0.29
ECM1-201ENST00000346569 EPRSP07814 1512 aaKnown RBP16.85■□□□□ 0.29
ECM1-201ENST00000346569 LRRIQ1Q96JM4 1722 aa16.84■□□□□ 0.29
ECM1-201ENST00000346569 CCDC18Q5T9S5 1454 aa16.84■□□□□ 0.29
ECM1-201ENST00000346569 HECW1Q76N89 1606 aa16.83■□□□□ 0.29
ECM1-201ENST00000346569 NUP153P49790 1475 aaKnown RBP16.83■□□□□ 0.28
ECM1-201ENST00000346569 PLB1Q6P1J6 1458 aa16.83■□□□□ 0.28
ECM1-201ENST00000346569 RAPGEF6Q8TEU7 1601 aa16.82■□□□□ 0.28
ECM1-201ENST00000346569 ERCC6L2Q5T890 1561 aa16.82■□□□□ 0.28
ECM1-201ENST00000346569 ABCA8O94911 1581 aa16.8■□□□□ 0.28
ECM1-201ENST00000346569 MTUS2Q5JR59 1369 aa16.79■□□□□ 0.28
ECM1-201ENST00000346569 RRBP1Q9P2E9 1410 aaKnown RBP16.77■□□□□ 0.28
ECM1-201ENST00000346569 CDK13Q14004 1512 aaKnown RBP16.77■□□□□ 0.28
ECM1-201ENST00000346569 PHLDB1Q86UU1 1377 aa16.76■□□□□ 0.27
ECM1-201ENST00000346569 MAGI3Q5TCQ9 1506 aa16.76■□□□□ 0.27
ECM1-201ENST00000346569 ARID3CA6NKF2 412 aa16.75■□□□□ 0.27
ECM1-201ENST00000346569 UACAQ9BZF9 1416 aa16.75■□□□□ 0.27
ECM1-201ENST00000346569 ATP10BO94823 1461 aa16.74■□□□□ 0.27
ECM1-201ENST00000346569 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
ECM1-201ENST00000346569 EHBP1L1Q8N3D4 1523 aa16.72■□□□□ 0.27
ECM1-201ENST00000346569 CCNB3Q8WWL7 1395 aa16.71■□□□□ 0.27
ECM1-201ENST00000346569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
ECM1-201ENST00000346569 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
ECM1-201ENST00000346569 NCOA2Q15596 1464 aa16.7■□□□□ 0.26
ECM1-201ENST00000346569 PLEKHD1A6NEE1 506 aa16.68■□□□□ 0.26
ECM1-201ENST00000346569 UHRF1BP1LA0JNW5 1464 aa16.67■□□□□ 0.26
ECM1-201ENST00000346569 TROQ12816 1431 aaPredicted RBP16.67■□□□□ 0.26
ECM1-201ENST00000346569 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.66■□□□□ 0.26
ECM1-201ENST00000346569 ABCC2Q92887 1545 aa16.66■□□□□ 0.26
ECM1-201ENST00000346569 SUPT6HQ7KZ85 1726 aaKnown RBP16.65■□□□□ 0.26
ECM1-201ENST00000346569 MYOM3Q5VTT5 1437 aa16.64■□□□□ 0.25
ECM1-201ENST00000346569 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
ECM1-201ENST00000346569 FGD6Q6ZV73 1430 aa16.63■□□□□ 0.25
ECM1-201ENST00000346569 KDM5BQ9UGL1 1544 aa16.61■□□□□ 0.25
ECM1-201ENST00000346569 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
ECM1-201ENST00000346569 FAM50AQ14320 339 aaKnown RBP16.58■□□□□ 0.24
ECM1-201ENST00000346569 MIA2Q96PC5 1412 aa16.58■□□□□ 0.24
ECM1-201ENST00000346569 ADCY10Q96PN6 1610 aa16.55■□□□□ 0.24
ECM1-201ENST00000346569 TCOF1Q13428 1488 aaKnown RBP16.54■□□□□ 0.24
ECM1-201ENST00000346569 ABCC10Q5T3U5 1492 aa16.54■□□□□ 0.24
ECM1-201ENST00000346569 GPATCH8Q9UKJ3 1502 aaKnown RBP16.53■□□□□ 0.24
ECM1-201ENST00000346569 KIF14Q15058 1648 aa16.52■□□□□ 0.23
ECM1-201ENST00000346569 ITGAEP38570 1179 aa16.52■□□□□ 0.23
ECM1-201ENST00000346569 HRCP23327 699 aa16.51■□□□□ 0.23
ECM1-201ENST00000346569 ZCCHC11Q5TAX3 1644 aaKnown RBP16.5■□□□□ 0.23
ECM1-201ENST00000346569 PTPN23Q9H3S7 1636 aa16.5■□□□□ 0.23
ECM1-201ENST00000346569 CFDP1Q9UEE9 299 aaPredicted RBP16.49■□□□□ 0.23
ECM1-201ENST00000346569 PTPRKQ15262 1439 aa16.48■□□□□ 0.23
ECM1-201ENST00000346569 ZNF644Q9H582 1327 aaPredicted RBP16.47■□□□□ 0.23
ECM1-201ENST00000346569 KCNH8Q96L42 1107 aa16.46■□□□□ 0.23
ECM1-201ENST00000346569 NPM1P06748 294 aaKnown RBP eCLIP16.45■□□□□ 0.22
ECM1-201ENST00000346569 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.43■□□□□ 0.22
ECM1-201ENST00000346569 KIF13AQ9H1H9 1805 aa16.42■□□□□ 0.22
ECM1-201ENST00000346569 MAPKBP1O60336 1514 aa16.42■□□□□ 0.22
ECM1-201ENST00000346569 SETD5Q9C0A6 1442 aa16.42■□□□□ 0.22
ECM1-201ENST00000346569 WDR7Q9Y4E6 1490 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms