RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RAB3GAP2Q9H2M9 1393 aa16.72■□□□□ 0.27
USP1-201ENST00000339950 SYNJ1O43426 1573 aa16.71■□□□□ 0.27
USP1-201ENST00000339950 MTUS2Q5JR59 1369 aa16.69■□□□□ 0.26
USP1-201ENST00000339950 CARMIL1Q5VZK9 1371 aa16.67■□□□□ 0.26
USP1-201ENST00000339950 KDM2AQ9Y2K7 1162 aa16.61■□□□□ 0.25
USP1-201ENST00000339950 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
USP1-201ENST00000339950 KIF21BO75037 1637 aa16.6■□□□□ 0.25
USP1-201ENST00000339950 MYT1LQ9UL68 1186 aa16.6■□□□□ 0.25
USP1-201ENST00000339950 FHOD3Q2V2M9 1422 aa16.59■□□□□ 0.25
USP1-201ENST00000339950 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
USP1-201ENST00000339950 TSHZ2Q9NRE2 1034 aa16.56■□□□□ 0.24
USP1-201ENST00000339950 MRS2Q9HD23 443 aa16.55■□□□□ 0.24
USP1-201ENST00000339950 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
USP1-201ENST00000339950 DNAJC5BQ9UF47 199 aa16.53■□□□□ 0.24
USP1-201ENST00000339950 CLSPNQ9HAW4 1339 aa16.53■□□□□ 0.24
USP1-201ENST00000339950 SENP3Q9H4L4 574 aaPredicted RBP16.52■□□□□ 0.23
USP1-201ENST00000339950 SETD5Q9C0A6 1442 aa16.51■□□□□ 0.23
USP1-201ENST00000339950 CDK11AQ9UQ88 783 aaPredicted RBP16.51■□□□□ 0.23
USP1-201ENST00000339950 PHLDB1Q86UU1 1377 aa16.5■□□□□ 0.23
USP1-201ENST00000339950 SLC4A1APQ9BWU0 796 aaKnown RBP16.49■□□□□ 0.23
USP1-201ENST00000339950 PPP1R15AO75807 674 aaPredicted RBP16.49■□□□□ 0.23
USP1-201ENST00000339950 IGF1RP08069 1367 aa16.48■□□□□ 0.23
USP1-201ENST00000339950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.47■□□□□ 0.233e-7■■■□□ 16.5
USP1-201ENST00000339950 B4GALNT3Q6L9W6 998 aa16.47■□□□□ 0.23
USP1-201ENST00000339950 NPM2Q86SE8 214 aaKnown RBP16.46■□□□□ 0.23
USP1-201ENST00000339950 HSPA5P11021 654 aaKnown RBP16.45■□□□□ 0.22
USP1-201ENST00000339950 EIF4G2P78344 907 aaKnown RBP eCLIP16.44■□□□□ 0.22
USP1-201ENST00000339950 RAD54L2Q9Y4B4 1467 aa16.44■□□□□ 0.22
USP1-201ENST00000339950 RGL3Q3MIN7 710 aa16.44■□□□□ 0.22
USP1-201ENST00000339950 BCL11AQ9H165 835 aa16.42■□□□□ 0.22
USP1-201ENST00000339950 NBR1Q14596 966 aa16.41■□□□□ 0.22
USP1-201ENST00000339950 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
USP1-201ENST00000339950 ARHGAP35Q9NRY4 1499 aa16.4■□□□□ 0.22
USP1-201ENST00000339950 RBM19Q9Y4C8 960 aaKnown RBP16.39■□□□□ 0.21
USP1-201ENST00000339950 ANP32EQ9BTT0 268 aa16.38■□□□□ 0.21
USP1-201ENST00000339950 L3MBTL2Q969R5 705 aa16.36■□□□□ 0.21
USP1-201ENST00000339950 CADPSQ9ULU8 1353 aa16.36■□□□□ 0.21
USP1-201ENST00000339950 CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
USP1-201ENST00000339950 CUX1P39880 1505 aa16.34■□□□□ 0.21
USP1-201ENST00000339950 ZNF644Q9H582 1327 aaPredicted RBP16.33■□□□□ 0.21
USP1-201ENST00000339950 PRXQ9BXM0 1461 aa16.33■□□□□ 0.2
USP1-201ENST00000339950 TMC1Q8TDI8 760 aa16.32■□□□□ 0.2
USP1-201ENST00000339950 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
USP1-201ENST00000339950 CHMP7Q8WUX9 453 aaPredicted RBP16.31■□□□□ 0.2
USP1-201ENST00000339950 RTL5Q5HYW3 569 aaPredicted RBP16.3■□□□□ 0.2
USP1-201ENST00000339950 MPHOSPH9Q99550 1183 aa16.3■□□□□ 0.2
USP1-201ENST00000339950 NESP48681 1621 aa16.3■□□□□ 0.2
USP1-201ENST00000339950 FHAD1B1AJZ9 1412 aa16.29■□□□□ 0.2
USP1-201ENST00000339950 UNC13AQ9UPW8 1703 aa16.29■□□□□ 0.2
USP1-201ENST00000339950 CFDP1Q9UEE9 299 aaPredicted RBP16.29■□□□□ 0.2
USP1-201ENST00000339950 CCDC136Q96JN2 1154 aa16.27■□□□□ 0.2
USP1-201ENST00000339950 RRBP1Q9P2E9 1410 aaKnown RBP16.26■□□□□ 0.19
USP1-201ENST00000339950 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
USP1-201ENST00000339950 TOP2BQ02880 1626 aa16.22■□□□□ 0.19
USP1-201ENST00000339950 FANCD2Q9BXW9 1451 aa16.21■□□□□ 0.19
USP1-201ENST00000339950 LRRC9Q6ZRR7 1453 aa16.21■□□□□ 0.19
USP1-201ENST00000339950 CARD11Q9BXL7 1154 aa16.2■□□□□ 0.18
USP1-201ENST00000339950 PKD2Q13563 968 aa16.19■□□□□ 0.18
USP1-201ENST00000339950 DCAF11Q8TEB1 546 aa16.19■□□□□ 0.18
USP1-201ENST00000339950 CCER2I3L3R5 266 aa16.18■□□□□ 0.18
USP1-201ENST00000339950 TSPY4P0CV99 314 aa16.18■□□□□ 0.18
USP1-201ENST00000339950 TSPY10P0CW01 314 aa16.18■□□□□ 0.18
USP1-201ENST00000339950 CC2D1BQ5T0F9 858 aaKnown RBP16.18■□□□□ 0.18
USP1-201ENST00000339950 WASHC2AQ641Q2 1341 aa16.17■□□□□ 0.18
USP1-201ENST00000339950 C11orf95C9JLR9 678 aaPredicted RBP16.17■□□□□ 0.18
USP1-201ENST00000339950 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
USP1-201ENST00000339950 EIF5BO60841 1220 aaKnown RBP16.15■□□□□ 0.18
USP1-201ENST00000339950 CHGAP10645 457 aaKnown RBP16.15■□□□□ 0.18
USP1-201ENST00000339950 CFTRP13569 1480 aa16.15■□□□□ 0.18
USP1-201ENST00000339950 CCDC18Q5T9S5 1454 aa16.14■□□□□ 0.17
USP1-201ENST00000339950 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.17
USP1-201ENST00000339950 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
USP1-201ENST00000339950 NBPF8Q3BBV2 869 aa16.12■□□□□ 0.17
USP1-201ENST00000339950 TIMELESSQ9UNS1 1208 aa16.12■□□□□ 0.17
USP1-201ENST00000339950 DAXXQ9UER7 740 aaPredicted RBP16.11■□□□□ 0.17
USP1-201ENST00000339950 PLEKHD1A6NEE1 506 aa16.11■□□□□ 0.17
USP1-201ENST00000339950 HNRNPMP52272 730 aaKnown RBP eCLIP16.1■□□□□ 0.172e-9■■■■■ 36.1
USP1-201ENST00000339950 FGD6Q6ZV73 1430 aa16.1■□□□□ 0.17
USP1-201ENST00000339950 PRKRIP1Q9H875 184 aaPredicted RBP16.09■□□□□ 0.17
USP1-201ENST00000339950 AQRO60306 1485 aaKnown RBP eCLIP16.09■□□□□ 0.174e-6■■■□□ 18.8
USP1-201ENST00000339950 RTN4Q9NQC3 1192 aaKnown RBP16.08■□□□□ 0.17
USP1-201ENST00000339950 FMN1Q68DA7 1419 aa16.08■□□□□ 0.16
USP1-201ENST00000339950 PPP4R2Q9NY27 417 aa16.08■□□□□ 0.16
USP1-201ENST00000339950 ANP32AP39687 249 aaKnown RBP16.06■□□□□ 0.16
USP1-201ENST00000339950 PEG3Q9GZU2 1588 aa16.06■□□□□ 0.16
USP1-201ENST00000339950 LAS1LQ9Y4W2 734 aaKnown RBP16.06■□□□□ 0.16
USP1-201ENST00000339950 TNNT2P45379 298 aaPredicted RBP16.04■□□□□ 0.16
USP1-201ENST00000339950 ST20-MTHFSA0A0A6YYL1 179 aa16.04■□□□□ 0.16
USP1-201ENST00000339950 MAPKBP1O60336 1514 aa16.03■□□□□ 0.16
USP1-201ENST00000339950 PTPRKQ15262 1439 aa16.02■□□□□ 0.16
USP1-201ENST00000339950 PLIN1O60240 522 aa16.02■□□□□ 0.15
USP1-201ENST00000339950 NEUROD2Q15784 382 aa16.02■□□□□ 0.15
USP1-201ENST00000339950 TIAM1Q13009 1591 aa16.01■□□□□ 0.15
USP1-201ENST00000339950 NUP155O75694 1391 aa16■□□□□ 0.15
USP1-201ENST00000339950 KIF7Q2M1P5 1343 aa16■□□□□ 0.15
USP1-201ENST00000339950 ARXQ96QS3 562 aa16■□□□□ 0.15
USP1-201ENST00000339950 NCOA2Q15596 1464 aa16■□□□□ 0.15
USP1-201ENST00000339950 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
USP1-201ENST00000339950 ZBTB47Q9UFB7 747 aaPredicted RBP15.98■□□□□ 0.15
USP1-201ENST00000339950 SKAP1Q86WV1 359 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms