RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 CTTNBP2Q8WZ74 1663 aa26.13■■□□□ 1.77
DDX41-201ENST00000330503 GRIN2BQ13224 1484 aa26.1■■□□□ 1.77
DDX41-201ENST00000330503 FHAD1B1AJZ9 1412 aa26.08■■□□□ 1.77
DDX41-201ENST00000330503 ADAMTS12P58397 1594 aa26.04■■□□□ 1.76
DDX41-201ENST00000330503 P3H3Q8IVL6 736 aa26.04■■□□□ 1.76
DDX41-201ENST00000330503 KANK4Q5T7N3 995 aaPredicted RBP26.02■■□□□ 1.76
DDX41-201ENST00000330503 EFCAB5A4FU69 1503 aa26.02■■□□□ 1.76
DDX41-201ENST00000330503 EIF4G3O43432 1585 aaKnown RBP25.98■■□□□ 1.75
DDX41-201ENST00000330503 FHOD3Q2V2M9 1422 aa25.98■■□□□ 1.75
DDX41-201ENST00000330503 SNAPC4Q5SXM2 1469 aa25.92■■□□□ 1.74
DDX41-201ENST00000330503 SAMD9Q5K651 1589 aa25.91■■□□□ 1.74
DDX41-201ENST00000330503 MAP3K1Q13233 1512 aa25.9■■□□□ 1.74
DDX41-201ENST00000330503 PCF11O94913 1555 aaKnown RBP25.87■■□□□ 1.73
DDX41-201ENST00000330503 TIAM1Q13009 1591 aa25.86■■□□□ 1.73
DDX41-201ENST00000330503 CASKIN1Q8WXD9 1431 aa25.83■■□□□ 1.73
DDX41-201ENST00000330503 ZEB1P37275 1124 aaPredicted RBP25.82■■□□□ 1.72
DDX41-201ENST00000330503 IQGAP2Q13576 1575 aa25.82■■□□□ 1.72
DDX41-201ENST00000330503 MAGI1Q96QZ7 1491 aaPredicted RBP25.81■■□□□ 1.72
DDX41-201ENST00000330503 FMN1Q68DA7 1419 aa25.81■■□□□ 1.72
DDX41-201ENST00000330503 FYCO1Q9BQS8 1478 aa25.81■■□□□ 1.72
DDX41-201ENST00000330503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.81■■□□□ 1.72
DDX41-201ENST00000330503 GRIN2AQ12879 1464 aa25.8■■□□□ 1.72
DDX41-201ENST00000330503 LRRC9Q6ZRR7 1453 aa25.77■■□□□ 1.72
DDX41-201ENST00000330503 HNRNPUL2Q1KMD3 747 aaKnown RBP25.76■■□□□ 1.71
DDX41-201ENST00000330503 ATP1B4Q9UN42 357 aaPredicted RBP25.76■■□□□ 1.71
DDX41-201ENST00000330503 CFAP43Q8NDM7 1665 aa25.76■■□□□ 1.71
DDX41-201ENST00000330503 KIAA0586Q9BVV6 1533 aa25.74■■□□□ 1.71
DDX41-201ENST00000330503 SYNJ2O15056 1496 aa25.74■■□□□ 1.71
DDX41-201ENST00000330503 RRBP1Q9P2E9 1410 aaKnown RBP25.73■■□□□ 1.71
DDX41-201ENST00000330503 UGGT2Q9NYU1 1516 aa25.72■■□□□ 1.71
DDX41-201ENST00000330503 CHMP7Q8WUX9 453 aaPredicted RBP25.72■■□□□ 1.71
DDX41-201ENST00000330503 CCER1Q8TC90 406 aaPredicted RBP25.69■■□□□ 1.7
DDX41-201ENST00000330503 CEP170Q5SW79 1584 aa25.65■■□□□ 1.7
DDX41-201ENST00000330503 FBLN2P98095 1184 aa25.64■■□□□ 1.69
DDX41-201ENST00000330503 LRRIQ1Q96JM4 1722 aa25.63■■□□□ 1.69
DDX41-201ENST00000330503 CCNB3Q8WWL7 1395 aa25.62■■□□□ 1.69
DDX41-201ENST00000330503 DISP1Q96F81 1524 aa25.61■■□□□ 1.69
DDX41-201ENST00000330503 PHLDB1Q86UU1 1377 aa25.6■■□□□ 1.69
DDX41-201ENST00000330503 NUP160Q12769 1436 aa25.6■■□□□ 1.69
DDX41-201ENST00000330503 KIAA0556O60303 1618 aa25.56■■□□□ 1.68
DDX41-201ENST00000330503 MTUS2Q5JR59 1369 aa25.49■■□□□ 1.67
DDX41-201ENST00000330503 HECW1Q76N89 1606 aa25.48■■□□□ 1.67
DDX41-201ENST00000330503 JPH4Q96JJ6 628 aa25.48■■□□□ 1.67
DDX41-201ENST00000330503 CCDC18Q5T9S5 1454 aa25.47■■□□□ 1.67
DDX41-201ENST00000330503 EPRSP07814 1512 aaKnown RBP25.45■■□□□ 1.66
DDX41-201ENST00000330503 MAGI3Q5TCQ9 1506 aa25.43■■□□□ 1.66
DDX41-201ENST00000330503 ITGAEP38570 1179 aa25.4■■□□□ 1.66
DDX41-201ENST00000330503 EHBP1L1Q8N3D4 1523 aa25.4■■□□□ 1.66
DDX41-201ENST00000330503 CDK13Q14004 1512 aaKnown RBP25.39■■□□□ 1.65
DDX41-201ENST00000330503 NCOA2Q15596 1464 aa25.38■■□□□ 1.65
DDX41-201ENST00000330503 CARMIL2Q6F5E8 1435 aa25.38■■□□□ 1.65
DDX41-201ENST00000330503 CHD1O14646 1710 aa25.38■■□□□ 1.65
DDX41-201ENST00000330503 FAM50AQ14320 339 aaKnown RBP25.37■■□□□ 1.65
DDX41-201ENST00000330503 RAPGEF6Q8TEU7 1601 aa25.36■■□□□ 1.65
DDX41-201ENST00000330503 SUPT6HQ7KZ85 1726 aaKnown RBP25.35■■□□□ 1.65
DDX41-201ENST00000330503 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.35■■□□□ 1.65
DDX41-201ENST00000330503 FGD6Q6ZV73 1430 aa25.35■■□□□ 1.65
DDX41-201ENST00000330503 NUP153P49790 1475 aaKnown RBP25.35■■□□□ 1.65
DDX41-201ENST00000330503 ARID3CA6NKF2 412 aa25.34■■□□□ 1.65
DDX41-201ENST00000330503 ARHGEF11O15085 1522 aa25.34■■□□□ 1.65
DDX41-201ENST00000330503 MYOM3Q5VTT5 1437 aa25.3■■□□□ 1.64
DDX41-201ENST00000330503 PLB1Q6P1J6 1458 aa25.29■■□□□ 1.64
DDX41-201ENST00000330503 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
DDX41-201ENST00000330503 PRG4Q92954 1404 aaPredicted RBP25.25■■□□□ 1.63
DDX41-201ENST00000330503 SETD5Q9C0A6 1442 aa25.21■■□□□ 1.63
DDX41-201ENST00000330503 RAB3GAP2Q9H2M9 1393 aa25.21■■□□□ 1.63
DDX41-201ENST00000330503 ABCA8O94911 1581 aa25.2■■□□□ 1.62
DDX41-201ENST00000330503 SHROOM2Q13796 1616 aa25.19■■□□□ 1.62
DDX41-201ENST00000330503 PTPN23Q9H3S7 1636 aa25.17■■□□□ 1.62
DDX41-201ENST00000330503 CDK11AQ9UQ88 783 aaPredicted RBP25.16■■□□□ 1.62
DDX41-201ENST00000330503 PTPRKQ15262 1439 aa25.16■■□□□ 1.62
DDX41-201ENST00000330503 CLSPNQ9HAW4 1339 aa25.16■■□□□ 1.62
DDX41-201ENST00000330503 TCOF1Q13428 1488 aaKnown RBP25.14■■□□□ 1.61
DDX41-201ENST00000330503 PTPRGP23470 1445 aa25.13■■□□□ 1.61
DDX41-201ENST00000330503 MIA2Q96PC5 1412 aa25.11■■□□□ 1.61
DDX41-201ENST00000330503 TROQ12816 1431 aaPredicted RBP25.11■■□□□ 1.61
DDX41-201ENST00000330503 ATP10BO94823 1461 aa25.09■■□□□ 1.61
DDX41-201ENST00000330503 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
DDX41-201ENST00000330503 ERCC6L2Q5T890 1561 aa25.07■■□□□ 1.6
DDX41-201ENST00000330503 ADCY10Q96PN6 1610 aa25.02■■□□□ 1.6
DDX41-201ENST00000330503 HFM1A2PYH4 1435 aa25.01■■□□□ 1.59
DDX41-201ENST00000330503 KIF14Q15058 1648 aa25■■□□□ 1.59
DDX41-201ENST00000330503 PLEKHD1A6NEE1 506 aa25■■□□□ 1.59
DDX41-201ENST00000330503 UACAQ9BZF9 1416 aa24.98■■□□□ 1.59
DDX41-201ENST00000330503 NAIPQ13075 1403 aa24.97■■□□□ 1.59
DDX41-201ENST00000330503 MAPKBP1O60336 1514 aa24.97■■□□□ 1.59
DDX41-201ENST00000330503 GPATCH8Q9UKJ3 1502 aaKnown RBP24.96■■□□□ 1.59
DDX41-201ENST00000330503 ZNF644Q9H582 1327 aaPredicted RBP24.95■■□□□ 1.59
DDX41-201ENST00000330503 CHIC2Q9UKJ5 165 aa24.92■■□□□ 1.58
DDX41-201ENST00000330503 ABCC10Q5T3U5 1492 aa24.91■■□□□ 1.58
DDX41-201ENST00000330503 CFDP1Q9UEE9 299 aaPredicted RBP24.89■■□□□ 1.58
DDX41-201ENST00000330503 RRP7BPQ9NSQ0 103 aa24.89■■□□□ 1.57
DDX41-201ENST00000330503 ITSN2Q9NZM3 1697 aa24.89■■□□□ 1.57
DDX41-201ENST00000330503 ABCC5O15440 1437 aa24.88■■□□□ 1.57
DDX41-201ENST00000330503 DAPK1P53355 1430 aa24.88■■□□□ 1.57
DDX41-201ENST00000330503 ABCC2Q92887 1545 aa24.87■■□□□ 1.57
DDX41-201ENST00000330503 AKNAQ7Z591 1439 aa24.87■■□□□ 1.57
DDX41-201ENST00000330503 DNMT1P26358 1616 aaKnown RBP24.86■■□□□ 1.57
DDX41-201ENST00000330503 CAMSAP2Q08AD1 1489 aa24.84■■□□□ 1.57
DDX41-201ENST00000330503 GCC2Q8IWJ2 1684 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms