RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 RUSC2Q8N2Y8 1516 aa16.87■□□□□ 0.29
SHMT2-201ENST00000328923 THOC2Q8NI27 1593 aaKnown RBP16.86■□□□□ 0.29
SHMT2-201ENST00000328923 DAXXQ9UER7 740 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-201ENST00000328923 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
SHMT2-201ENST00000328923 KIF21AQ7Z4S6 1674 aa16.84■□□□□ 0.29
SHMT2-201ENST00000328923 BIVM-ERCC5R4GMW8 1640 aa16.81■□□□□ 0.28
SHMT2-201ENST00000328923 GOLGA3Q08378 1498 aa16.81■□□□□ 0.28
SHMT2-201ENST00000328923 NBR1Q14596 966 aa16.78■□□□□ 0.28
SHMT2-201ENST00000328923 PODXL2Q9NZ53 605 aa16.78■□□□□ 0.28
SHMT2-201ENST00000328923 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
SHMT2-201ENST00000328923 PDS5BQ9NTI5 1447 aa16.75■□□□□ 0.27
SHMT2-201ENST00000328923 CUX1P39880 1505 aa16.74■□□□□ 0.27
SHMT2-201ENST00000328923 NEFLP07196 543 aa16.71■□□□□ 0.27
SHMT2-201ENST00000328923 KCNH8Q96L42 1107 aa16.71■□□□□ 0.27
SHMT2-201ENST00000328923 KIF21BO75037 1637 aa16.7■□□□□ 0.26
SHMT2-201ENST00000328923 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
SHMT2-201ENST00000328923 UBTFP17480 764 aaKnown RBP16.65■□□□□ 0.26
SHMT2-201ENST00000328923 VPS8Q8N3P4 1428 aa16.64■□□□□ 0.25
SHMT2-201ENST00000328923 MRC2Q9UBG0 1479 aa16.63■□□□□ 0.25
SHMT2-201ENST00000328923 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
SHMT2-201ENST00000328923 CDK11AQ9UQ88 783 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-201ENST00000328923 HNRNPUL2Q1KMD3 747 aaKnown RBP16.6■□□□□ 0.25
SHMT2-201ENST00000328923 WDR62O43379 1518 aa16.59■□□□□ 0.25
SHMT2-201ENST00000328923 CLIP1P30622 1438 aa16.59■□□□□ 0.25
SHMT2-201ENST00000328923 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.25
SHMT2-201ENST00000328923 NOP58Q9Y2X3 529 aaKnown RBP16.58■□□□□ 0.25
SHMT2-201ENST00000328923 TOPBP1Q92547 1522 aa16.58■□□□□ 0.24
SHMT2-201ENST00000328923 PAK3O75914 559 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-201ENST00000328923 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
SHMT2-201ENST00000328923 KIF27Q86VH2 1401 aa16.54■□□□□ 0.24
SHMT2-201ENST00000328923 DHX57Q6P158 1386 aaKnown RBP16.54■□□□□ 0.24
SHMT2-201ENST00000328923 RTL5Q5HYW3 569 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-201ENST00000328923 FGD5Q6ZNL6 1462 aa16.53■□□□□ 0.24
SHMT2-201ENST00000328923 PRXQ9BXM0 1461 aa16.52■□□□□ 0.24
SHMT2-201ENST00000328923 ERICH3Q5RHP9 1530 aa16.51■□□□□ 0.23
SHMT2-201ENST00000328923 TIMELESSQ9UNS1 1208 aa16.51■□□□□ 0.23
SHMT2-201ENST00000328923 POLA1P09884 1462 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-201ENST00000328923 ZMYND15Q9H091 742 aa16.47■□□□□ 0.23
SHMT2-201ENST00000328923 WDR97A6NE52 1622 aa16.42■□□□□ 0.22
SHMT2-201ENST00000328923 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
SHMT2-201ENST00000328923 VSIG10Q8N0Z9 540 aa16.4■□□□□ 0.22
SHMT2-201ENST00000328923 TRIM52Q96A61 297 aa16.4■□□□□ 0.22
SHMT2-201ENST00000328923 RAD54L2Q9Y4B4 1467 aa16.39■□□□□ 0.22
SHMT2-201ENST00000328923 IRX6P78412 446 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-201ENST00000328923 IGF1RP08069 1367 aa16.38■□□□□ 0.21
SHMT2-201ENST00000328923 TARBP1Q13395 1621 aaKnown RBP16.38■□□□□ 0.21
SHMT2-201ENST00000328923 RRBP1Q9P2E9 1410 aaKnown RBP16.38■□□□□ 0.21
SHMT2-201ENST00000328923 BRPF3Q9ULD4 1205 aa16.37■□□□□ 0.21
SHMT2-201ENST00000328923 C11orf95C9JLR9 678 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-201ENST00000328923 GLIPR1L2Q4G1C9 344 aa16.35■□□□□ 0.21
SHMT2-201ENST00000328923 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-201ENST00000328923 WASHC2AQ641Q2 1341 aa16.34■□□□□ 0.21
SHMT2-201ENST00000328923 ABCA5Q8WWZ7 1642 aa16.31■□□□□ 0.2
SHMT2-201ENST00000328923 CARMIL1Q5VZK9 1371 aa16.3■□□□□ 0.2
SHMT2-201ENST00000328923 RSPH6AQ9H0K4 717 aa16.3■□□□□ 0.2
SHMT2-201ENST00000328923 IFT140Q96RY7 1462 aa16.3■□□□□ 0.2
SHMT2-201ENST00000328923 WASHC2CQ9Y4E1 1318 aa16.28■□□□□ 0.2
SHMT2-201ENST00000328923 OSCARQ8IYS5 282 aa16.28■□□□□ 0.2
SHMT2-201ENST00000328923 ARAP1Q96P48 1450 aa16.28■□□□□ 0.2
SHMT2-201ENST00000328923 A0A0U1RQG5 324 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-201ENST00000328923 IPO9Q96P70 1041 aaKnown RBP16.25■□□□□ 0.19
SHMT2-201ENST00000328923 ZBTB47Q9UFB7 747 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-201ENST00000328923 GAPVD1Q14C86 1478 aa16.22■□□□□ 0.19
SHMT2-201ENST00000328923 TDRD9Q8NDG6 1382 aaKnown RBP16.22■□□□□ 0.19
SHMT2-201ENST00000328923 MAPKBP1O60336 1514 aa16.22■□□□□ 0.19
SHMT2-201ENST00000328923 ZNF608Q9ULD9 1512 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-201ENST00000328923 ARHGAP35Q9NRY4 1499 aa16.21■□□□□ 0.19
SHMT2-201ENST00000328923 CUL7Q14999 1698 aa16.21■□□□□ 0.19
SHMT2-201ENST00000328923 PBRM1Q86U86 1689 aa16.2■□□□□ 0.18
SHMT2-201ENST00000328923 CCNB3Q8WWL7 1395 aa16.2■□□□□ 0.18
SHMT2-201ENST00000328923 NEFMP07197 916 aa16.19■□□□□ 0.18
SHMT2-201ENST00000328923 ANP32AP39687 249 aaKnown RBP16.19■□□□□ 0.18
SHMT2-201ENST00000328923 PPP4R2Q9NY27 417 aa16.18■□□□□ 0.18
SHMT2-201ENST00000328923 EIF4G3O43432 1585 aaKnown RBP16.18■□□□□ 0.18
SHMT2-201ENST00000328923 CCER2I3L3R5 266 aa16.17■□□□□ 0.18
SHMT2-201ENST00000328923 B4GALNT3Q6L9W6 998 aa16.16■□□□□ 0.18
SHMT2-201ENST00000328923 AQRO60306 1485 aaKnown RBP eCLIP16.16■□□□□ 0.184e-7■■■■□ 22.4
SHMT2-201ENST00000328923 DDX10Q13206 875 aaKnown RBP16.15■□□□□ 0.18
SHMT2-201ENST00000328923 LAS1LQ9Y4W2 734 aaKnown RBP16.14■□□□□ 0.17
SHMT2-201ENST00000328923 RIMBP3CA6NJZ7 1639 aa16.14■□□□□ 0.17
SHMT2-201ENST00000328923 RIMBP3BA6NNM3 1639 aa16.14■□□□□ 0.17
SHMT2-201ENST00000328923 RIMBP3Q9UFD9 1639 aa16.14■□□□□ 0.17
SHMT2-201ENST00000328923 RBM10P98175 930 aaKnown RBP16.13■□□□□ 0.17
SHMT2-201ENST00000328923 KANK4Q5T7N3 995 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-201ENST00000328923 GRIN2BQ13224 1484 aa16.13■□□□□ 0.17
SHMT2-201ENST00000328923 FGD1P98174 961 aa16.12■□□□□ 0.17
SHMT2-201ENST00000328923 MAP3K1Q13233 1512 aa16.11■□□□□ 0.17
SHMT2-201ENST00000328923 PDE4CQ08493 712 aa16.11■□□□□ 0.17
SHMT2-201ENST00000328923 USP35Q9P2H5 1018 aa16.11■□□□□ 0.17
SHMT2-201ENST00000328923 RAB3GAP2Q9H2M9 1393 aa16.11■□□□□ 0.17
SHMT2-201ENST00000328923 AAMPQ13685 434 aa16.1■□□□□ 0.17
SHMT2-201ENST00000328923 ADAMTS12P58397 1594 aa16.1■□□□□ 0.17
SHMT2-201ENST00000328923 CTTNBP2Q8WZ74 1663 aa16.1■□□□□ 0.17
SHMT2-201ENST00000328923 PPP1R15AO75807 674 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-201ENST00000328923 CHD1O14646 1710 aa16.07■□□□□ 0.16
SHMT2-201ENST00000328923 FAM43AQ8N2R8 423 aa16.06■□□□□ 0.16
SHMT2-201ENST00000328923 ARHGEF11O15085 1522 aa16.06■□□□□ 0.16
SHMT2-201ENST00000328923 FHAD1B1AJZ9 1412 aa16.05■□□□□ 0.16
SHMT2-201ENST00000328923 GSE1Q14687 1217 aa16.05■□□□□ 0.16
SHMT2-201ENST00000328923 SETD5Q9C0A6 1442 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms