RNA–Protein interactions for RNA: ENST00000322875.8

CD46-201, Transcript of CD46 molecule, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CD46, Length 3,278 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-201ENST00000322875 TOP2BQ02880 1626 aa11.03□□□□□ -0.64
CD46-201ENST00000322875 ATAD2BQ9ULI0 1458 aa11.02□□□□□ -0.64
CD46-201ENST00000322875 RAB3GAP2Q9H2M9 1393 aa11.01□□□□□ -0.65
CD46-201ENST00000322875 BIVM-ERCC5R4GMW8 1640 aa11.01□□□□□ -0.65
CD46-201ENST00000322875 DDX10Q13206 875 aaKnown RBP11□□□□□ -0.65
CD46-201ENST00000322875 TIMELESSQ9UNS1 1208 aa10.98□□□□□ -0.65
CD46-201ENST00000322875 MAP3K1Q13233 1512 aa10.98□□□□□ -0.65
CD46-201ENST00000322875 ERICH6BQ5W0A0 696 aa10.96□□□□□ -0.66
CD46-201ENST00000322875 TRIM52Q96A61 297 aa10.96□□□□□ -0.66
CD46-201ENST00000322875 SETD5Q9C0A6 1442 aa10.95□□□□□ -0.66
CD46-201ENST00000322875 DEKP35659 375 aaKnown RBP10.95□□□□□ -0.66
CD46-201ENST00000322875 CDK11AQ9UQ88 783 aaPredicted RBP10.94□□□□□ -0.66
CD46-201ENST00000322875 ARHGAP35Q9NRY4 1499 aa10.93□□□□□ -0.66
CD46-201ENST00000322875 TIAM1Q13009 1591 aa10.92□□□□□ -0.66
CD46-201ENST00000322875 ANP32CO43423 234 aa10.91□□□□□ -0.66
CD46-201ENST00000322875 ERICH6Q7L0X2 663 aa10.91□□□□□ -0.66
CD46-201ENST00000322875 SIN3AQ96ST3 1273 aa10.88□□□□□ -0.67
CD46-201ENST00000322875 LAMC3Q9Y6N6 1575 aa10.87□□□□□ -0.67
CD46-201ENST00000322875 PPP4R2Q9NY27 417 aa10.87□□□□□ -0.67
CD46-201ENST00000322875 KDM5BQ9UGL1 1544 aa10.86□□□□□ -0.67
CD46-201ENST00000322875 RANGAP1P46060 587 aaPredicted RBP10.85□□□□□ -0.67
CD46-201ENST00000322875 CFAP43Q8NDM7 1665 aa10.85□□□□□ -0.67
CD46-201ENST00000322875 LRRC9Q6ZRR7 1453 aa10.85□□□□□ -0.67
CD46-201ENST00000322875 ANO8Q9HCE9 1232 aaPredicted RBP10.84□□□□□ -0.67
CD46-201ENST00000322875 PHLDB1Q86UU1 1377 aa10.83□□□□□ -0.68
CD46-201ENST00000322875 NOP58Q9Y2X3 529 aaKnown RBP10.82□□□□□ -0.68
CD46-201ENST00000322875 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.82□□□□□ -0.683e-6■■□□□ 12.8
CD46-201ENST00000322875 FHAD1B1AJZ9 1412 aa10.81□□□□□ -0.68
CD46-201ENST00000322875 IRX6P78412 446 aaPredicted RBP10.81□□□□□ -0.68
CD46-201ENST00000322875 PAK3O75914 559 aaPredicted RBP10.8□□□□□ -0.68
CD46-201ENST00000322875 HIRIP3Q9BW71 556 aaPredicted RBP10.8□□□□□ -0.68
CD46-201ENST00000322875 ERCC6Q03468 1493 aa10.8□□□□□ -0.68
CD46-201ENST00000322875 NCOA2Q15596 1464 aa10.8□□□□□ -0.68
CD46-201ENST00000322875 HNRNPUQ00839 825 aaKnown RBP eCLIP10.8□□□□□ -0.68
CD46-201ENST00000322875 CUX1P39880 1505 aa10.79□□□□□ -0.68
CD46-201ENST00000322875 KIF27Q86VH2 1401 aa10.78□□□□□ -0.68
CD46-201ENST00000322875 PDS5BQ9NTI5 1447 aa10.77□□□□□ -0.69
CD46-201ENST00000322875 SALL2Q9Y467 1007 aaPredicted RBP10.76□□□□□ -0.69
CD46-201ENST00000322875 WASHC2AQ641Q2 1341 aa10.74□□□□□ -0.69
CD46-201ENST00000322875 B4GALNT3Q6L9W6 998 aa10.73□□□□□ -0.69
CD46-201ENST00000322875 ZBED9Q6R2W3 1325 aa10.73□□□□□ -0.69
CD46-201ENST00000322875 PCF11O94913 1555 aaKnown RBP10.73□□□□□ -0.69
CD46-201ENST00000322875 CADPSQ9ULU8 1353 aa10.73□□□□□ -0.69
CD46-201ENST00000322875 UACAQ9BZF9 1416 aa10.73□□□□□ -0.69
CD46-201ENST00000322875 RNF123Q5XPI4 1314 aa10.72□□□□□ -0.69
CD46-201ENST00000322875 IPO9Q96P70 1041 aaKnown RBP10.72□□□□□ -0.69
CD46-201ENST00000322875 THOC2Q8NI27 1593 aaKnown RBP10.72□□□□□ -0.69
CD46-201ENST00000322875 NBR1Q14596 966 aa10.72□□□□□ -0.69
CD46-201ENST00000322875 CNTLNQ9NXG0 1405 aa10.71□□□□□ -0.69
CD46-201ENST00000322875 TONSLQ96HA7 1378 aa10.71□□□□□ -0.69
CD46-201ENST00000322875 PTPN23Q9H3S7 1636 aa10.71□□□□□ -0.69
CD46-201ENST00000322875 CCDC184Q52MB2 194 aa10.7□□□□□ -0.7
CD46-201ENST00000322875 HFM1A2PYH4 1435 aa10.7□□□□□ -0.7
CD46-201ENST00000322875 ABCA5Q8WWZ7 1642 aa10.7□□□□□ -0.7
CD46-201ENST00000322875 CCDC18Q5T9S5 1454 aa10.7□□□□□ -0.7
CD46-201ENST00000322875 NESP48681 1621 aa10.7□□□□□ -0.7
CD46-201ENST00000322875 POLR1AO95602 1720 aaPredicted RBP10.69□□□□□ -0.7
CD46-201ENST00000322875 IL27Q8NEV9 243 aa10.68□□□□□ -0.7
CD46-201ENST00000322875 SMG6Q86US8 1419 aaKnown RBP10.68□□□□□ -0.7
CD46-201ENST00000322875 C11orf95C9JLR9 678 aaPredicted RBP10.68□□□□□ -0.7
CD46-201ENST00000322875 KIF21AQ7Z4S6 1674 aa10.68□□□□□ -0.7
CD46-201ENST00000322875 PRDM2Q13029 1718 aa10.67□□□□□ -0.7
CD46-201ENST00000322875 WASHC2CQ9Y4E1 1318 aa10.67□□□□□ -0.7
CD46-201ENST00000322875 AQRO60306 1485 aaKnown RBP eCLIP10.66□□□□□ -0.75e-23■■■■■ 36
CD46-201ENST00000322875 IGF1RP08069 1367 aa10.66□□□□□ -0.7
CD46-201ENST00000322875 UBE2Q2Q8WVN8 375 aa10.66□□□□□ -0.7
CD46-201ENST00000322875 PTPRKQ15262 1439 aa10.66□□□□□ -0.7
CD46-201ENST00000322875 NCOA1Q15788 1441 aa10.66□□□□□ -0.7
CD46-201ENST00000322875 FYCO1Q9BQS8 1478 aa10.66□□□□□ -0.7
CD46-201ENST00000322875 FAM50AQ14320 339 aaKnown RBP10.66□□□□□ -0.7
CD46-201ENST00000322875 DENND4BO75064 1496 aaPredicted RBP10.65□□□□□ -0.7
CD46-201ENST00000322875 PRKRIP1Q9H875 184 aaPredicted RBP10.65□□□□□ -0.7
CD46-201ENST00000322875 FGD6Q6ZV73 1430 aa10.65□□□□□ -0.71
CD46-201ENST00000322875 CFTRP13569 1480 aa10.64□□□□□ -0.71
CD46-201ENST00000322875 MRC2Q9UBG0 1479 aa10.64□□□□□ -0.71
CD46-201ENST00000322875 DNAJC5Q9H3Z4 198 aa10.64□□□□□ -0.71
CD46-201ENST00000322875 NAIPQ13075 1403 aa10.64□□□□□ -0.71
CD46-201ENST00000322875 HECW1Q76N89 1606 aa10.64□□□□□ -0.71
CD46-201ENST00000322875 HSPA5P11021 654 aaKnown RBP10.64□□□□□ -0.71
CD46-201ENST00000322875 ANP32AP39687 249 aaKnown RBP10.63□□□□□ -0.71
CD46-201ENST00000322875 WDR62O43379 1518 aa10.63□□□□□ -0.71
CD46-201ENST00000322875 USP35Q9P2H5 1018 aa10.62□□□□□ -0.71
CD46-201ENST00000322875 ZBTB47Q9UFB7 747 aaPredicted RBP10.62□□□□□ -0.71
CD46-201ENST00000322875 FGD5Q6ZNL6 1462 aa10.62□□□□□ -0.71
CD46-201ENST00000322875 CASKIN1Q8WXD9 1431 aa10.62□□□□□ -0.71
CD46-201ENST00000322875 AKNAQ7Z591 1439 aa10.62□□□□□ -0.71
CD46-201ENST00000322875 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
CD46-201ENST00000322875 CCDC7Q96M83 1385 aa10.61□□□□□ -0.71
CD46-201ENST00000322875 GCC2Q8IWJ2 1684 aa10.6□□□□□ -0.71
CD46-201ENST00000322875 EFCAB5A4FU69 1503 aa10.6□□□□□ -0.71
CD46-201ENST00000322875 CCDC136Q96JN2 1154 aa10.6□□□□□ -0.71
CD46-201ENST00000322875 SPATA31E1Q6ZUB1 1445 aa10.59□□□□□ -0.71
CD46-201ENST00000322875 LRRIQ1Q96JM4 1722 aa10.58□□□□□ -0.72
CD46-201ENST00000322875 CARMIL1Q5VZK9 1371 aa10.57□□□□□ -0.72
CD46-201ENST00000322875 SNAPC4Q5SXM2 1469 aa10.57□□□□□ -0.72
CD46-201ENST00000322875 FANCD2Q9BXW9 1451 aa10.57□□□□□ -0.72
CD46-201ENST00000322875 NUDCQ9Y266 331 aa10.57□□□□□ -0.72
CD46-201ENST00000322875 FMN1Q68DA7 1419 aa10.57□□□□□ -0.72
CD46-201ENST00000322875 EIF4G2P78344 907 aaKnown RBP eCLIP10.57□□□□□ -0.72
CD46-201ENST00000322875 FAM9BQ8IZU0 186 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms