RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 CCNB3Q8WWL7 1395 aa17.89■□□□□ 0.45
RETREG3-201ENST00000309428 IRX6P78412 446 aaPredicted RBP17.88■□□□□ 0.45
RETREG3-201ENST00000309428 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
RETREG3-201ENST00000309428 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
RETREG3-201ENST00000309428 DHX57Q6P158 1386 aaKnown RBP17.85■□□□□ 0.45
RETREG3-201ENST00000309428 FOXD1Q16676 465 aa17.85■□□□□ 0.45
RETREG3-201ENST00000309428 ANP32EQ9BTT0 268 aa17.84■□□□□ 0.45
RETREG3-201ENST00000309428 RAB3GAP2Q9H2M9 1393 aa17.83■□□□□ 0.44
RETREG3-201ENST00000309428 NESP48681 1621 aa17.83■□□□□ 0.44
RETREG3-201ENST00000309428 CUX1P39880 1505 aa17.83■□□□□ 0.44
RETREG3-201ENST00000309428 IGF1RP08069 1367 aa17.82■□□□□ 0.44
RETREG3-201ENST00000309428 MTUS2Q5JR59 1369 aa17.81■□□□□ 0.44
RETREG3-201ENST00000309428 CADPSQ9ULU8 1353 aa17.8■□□□□ 0.44
RETREG3-201ENST00000309428 BCL11AQ9H165 835 aa17.79■□□□□ 0.44
RETREG3-201ENST00000309428 FGD5Q6ZNL6 1462 aa17.74■□□□□ 0.43
RETREG3-201ENST00000309428 ANP32CO43423 234 aa17.74■□□□□ 0.43
RETREG3-201ENST00000309428 TSHZ2Q9NRE2 1034 aa17.73■□□□□ 0.43
RETREG3-201ENST00000309428 ARHGAP35Q9NRY4 1499 aa17.72■□□□□ 0.43
RETREG3-201ENST00000309428 PHLDB1Q86UU1 1377 aa17.71■□□□□ 0.43
RETREG3-201ENST00000309428 TONSLQ96HA7 1378 aa17.71■□□□□ 0.43
RETREG3-201ENST00000309428 NCAPD3P42695 1498 aa17.71■□□□□ 0.43
RETREG3-201ENST00000309428 PRXQ9BXM0 1461 aa17.7■□□□□ 0.42
RETREG3-201ENST00000309428 CDK11AQ9UQ88 783 aaPredicted RBP17.7■□□□□ 0.42
RETREG3-201ENST00000309428 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
RETREG3-201ENST00000309428 FANCD2Q9BXW9 1451 aa17.67■□□□□ 0.42
RETREG3-201ENST00000309428 CFTRP13569 1480 aa17.65■□□□□ 0.42
RETREG3-201ENST00000309428 HNRNPUQ00839 825 aaKnown RBP eCLIP17.64■□□□□ 0.42
RETREG3-201ENST00000309428 NBR1Q14596 966 aa17.64■□□□□ 0.42
RETREG3-201ENST00000309428 FAM9BQ8IZU0 186 aa17.62■□□□□ 0.41
RETREG3-201ENST00000309428 SETD5Q9C0A6 1442 aa17.6■□□□□ 0.41
RETREG3-201ENST00000309428 PEG3Q9GZU2 1588 aa17.59■□□□□ 0.41
RETREG3-201ENST00000309428 KDM2AQ9Y2K7 1162 aa17.57■□□□□ 0.4
RETREG3-201ENST00000309428 SALL2Q9Y467 1007 aaPredicted RBP17.56■□□□□ 0.4
RETREG3-201ENST00000309428 MYT1LQ9UL68 1186 aa17.56■□□□□ 0.4
RETREG3-201ENST00000309428 RTL5Q5HYW3 569 aaPredicted RBP17.55■□□□□ 0.4
RETREG3-201ENST00000309428 RBM19Q9Y4C8 960 aaKnown RBP17.54■□□□□ 0.4
RETREG3-201ENST00000309428 CLSPNQ9HAW4 1339 aa17.54■□□□□ 0.4
RETREG3-201ENST00000309428 CHMP7Q8WUX9 453 aaPredicted RBP17.53■□□□□ 0.4
RETREG3-201ENST00000309428 CC2D2AQ9P2K1 1620 aa17.52■□□□□ 0.4
RETREG3-201ENST00000309428 ZNF644Q9H582 1327 aaPredicted RBP17.51■□□□□ 0.39
RETREG3-201ENST00000309428 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
RETREG3-201ENST00000309428 SLC4A1APQ9BWU0 796 aaKnown RBP17.5■□□□□ 0.39
RETREG3-201ENST00000309428 NPM2Q86SE8 214 aaKnown RBP17.5■□□□□ 0.39
RETREG3-201ENST00000309428 FHAD1B1AJZ9 1412 aa17.49■□□□□ 0.39
RETREG3-201ENST00000309428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.49■□□□□ 0.39
RETREG3-201ENST00000309428 PPP1R15AO75807 674 aaPredicted RBP17.48■□□□□ 0.39
RETREG3-201ENST00000309428 AQRO60306 1485 aaKnown RBP eCLIP17.47■□□□□ 0.395e-6■■■□□ 18.1
RETREG3-201ENST00000309428 LRRC9Q6ZRR7 1453 aa17.46■□□□□ 0.38
RETREG3-201ENST00000309428 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
RETREG3-201ENST00000309428 ERICH3Q5RHP9 1530 aa17.44■□□□□ 0.38
RETREG3-201ENST00000309428 PDS5BQ9NTI5 1447 aa17.44■□□□□ 0.38
RETREG3-201ENST00000309428 RRBP1Q9P2E9 1410 aaKnown RBP17.43■□□□□ 0.38
RETREG3-201ENST00000309428 HMGXB3Q12766 1538 aa17.42■□□□□ 0.38
RETREG3-201ENST00000309428 HSPA5P11021 654 aaKnown RBP17.41■□□□□ 0.38
RETREG3-201ENST00000309428 RGL3Q3MIN7 710 aa17.41■□□□□ 0.38
RETREG3-201ENST00000309428 CFDP1Q9UEE9 299 aaPredicted RBP17.39■□□□□ 0.37
RETREG3-201ENST00000309428 MRS2Q9HD23 443 aa17.38■□□□□ 0.37
RETREG3-201ENST00000309428 L3MBTL2Q969R5 705 aa17.38■□□□□ 0.37
RETREG3-201ENST00000309428 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
RETREG3-201ENST00000309428 BIVM-ERCC5R4GMW8 1640 aa17.37■□□□□ 0.37
RETREG3-201ENST00000309428 RTN4Q9NQC3 1192 aaKnown RBP17.36■□□□□ 0.37
RETREG3-201ENST00000309428 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
RETREG3-201ENST00000309428 EIF4G2P78344 907 aaKnown RBP eCLIP17.35■□□□□ 0.37
RETREG3-201ENST00000309428 MPHOSPH9Q99550 1183 aa17.35■□□□□ 0.37
RETREG3-201ENST00000309428 GAPVD1Q14C86 1478 aa17.34■□□□□ 0.37
RETREG3-201ENST00000309428 B4GALNT3Q6L9W6 998 aa17.34■□□□□ 0.37
RETREG3-201ENST00000309428 PCF11O94913 1555 aaKnown RBP17.32■□□□□ 0.36
RETREG3-201ENST00000309428 TIAM1Q13009 1591 aa17.32■□□□□ 0.36
RETREG3-201ENST00000309428 DAXXQ9UER7 740 aaPredicted RBP17.32■□□□□ 0.36
RETREG3-201ENST00000309428 FMN1Q68DA7 1419 aa17.31■□□□□ 0.36
RETREG3-201ENST00000309428 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
RETREG3-201ENST00000309428 FGD6Q6ZV73 1430 aa17.3■□□□□ 0.36
RETREG3-201ENST00000309428 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
RETREG3-201ENST00000309428 EIF5BO60841 1220 aaKnown RBP17.28■□□□□ 0.36
RETREG3-201ENST00000309428 ANP32AP39687 249 aaKnown RBP17.27■□□□□ 0.36
RETREG3-201ENST00000309428 ERCC6Q03468 1493 aa17.27■□□□□ 0.35
RETREG3-201ENST00000309428 PTPRKQ15262 1439 aa17.26■□□□□ 0.35
RETREG3-201ENST00000309428 URB2Q14146 1524 aaKnown RBP17.24■□□□□ 0.35
RETREG3-201ENST00000309428 PKD2Q13563 968 aa17.24■□□□□ 0.35
RETREG3-201ENST00000309428 HNRNPMP52272 730 aaKnown RBP eCLIP17.23■□□□□ 0.35
RETREG3-201ENST00000309428 NCOA2Q15596 1464 aa17.23■□□□□ 0.35
RETREG3-201ENST00000309428 DEKP35659 375 aaKnown RBP17.22■□□□□ 0.35
RETREG3-201ENST00000309428 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
RETREG3-201ENST00000309428 MAPKBP1O60336 1514 aa17.22■□□□□ 0.35
RETREG3-201ENST00000309428 PLEKHD1A6NEE1 506 aa17.22■□□□□ 0.35
RETREG3-201ENST00000309428 TSPY4P0CV99 314 aa17.2■□□□□ 0.34
RETREG3-201ENST00000309428 TSPY10P0CW01 314 aa17.2■□□□□ 0.34
RETREG3-201ENST00000309428 CDK13Q14004 1512 aaKnown RBP17.2■□□□□ 0.34
RETREG3-201ENST00000309428 C11orf95C9JLR9 678 aaPredicted RBP17.2■□□□□ 0.34
RETREG3-201ENST00000309428 CASKIN1Q8WXD9 1431 aa17.2■□□□□ 0.34
RETREG3-201ENST00000309428 DCAF11Q8TEB1 546 aa17.18■□□□□ 0.34
RETREG3-201ENST00000309428 WASHC2AQ641Q2 1341 aa17.18■□□□□ 0.34
RETREG3-201ENST00000309428 NBPF8Q3BBV2 869 aa17.17■□□□□ 0.34
RETREG3-201ENST00000309428 ZBTB47Q9UFB7 747 aaPredicted RBP17.17■□□□□ 0.34
RETREG3-201ENST00000309428 JPH4Q96JJ6 628 aa17.16■□□□□ 0.34
RETREG3-201ENST00000309428 MYOM3Q5VTT5 1437 aa17.15■□□□□ 0.34
RETREG3-201ENST00000309428 CARD11Q9BXL7 1154 aa17.15■□□□□ 0.34
RETREG3-201ENST00000309428 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.33
RETREG3-201ENST00000309428 DNMBPQ6XZF7 1577 aa17.13■□□□□ 0.33
RETREG3-201ENST00000309428 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms