RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 HNRNPUQ00839 825 aaKnown RBP eCLIP20.21■□□□□ 0.83
CDT1-201ENST00000301019 PRDM2Q13029 1718 aa20.21■□□□□ 0.83
CDT1-201ENST00000301019 CNGB1Q14028 1251 aaPredicted RBP20.2■□□□□ 0.82
CDT1-201ENST00000301019 FANCIQ9NVI1 1328 aa20.2■□□□□ 0.82
CDT1-201ENST00000301019 RUSC2Q8N2Y8 1516 aa20.18■□□□□ 0.82
CDT1-201ENST00000301019 DHX57Q6P158 1386 aaKnown RBP20.17■□□□□ 0.82
CDT1-201ENST00000301019 LAMC3Q9Y6N6 1575 aa20.16■□□□□ 0.82
CDT1-201ENST00000301019 RTL5Q5HYW3 569 aaPredicted RBP20.15■□□□□ 0.82
CDT1-201ENST00000301019 FANCD2Q9BXW9 1451 aa20.15■□□□□ 0.82
CDT1-201ENST00000301019 SIN3AQ96ST3 1273 aa20.14■□□□□ 0.81
CDT1-201ENST00000301019 TOP2BQ02880 1626 aa20.13■□□□□ 0.81
CDT1-201ENST00000301019 NOP58Q9Y2X3 529 aaKnown RBP20.13■□□□□ 0.81
CDT1-201ENST00000301019 CUX1P39880 1505 aa20.12■□□□□ 0.81
CDT1-201ENST00000301019 ANP32CO43423 234 aa20.12■□□□□ 0.81
CDT1-201ENST00000301019 TNIKQ9UKE5 1360 aa20.1■□□□□ 0.81
CDT1-201ENST00000301019 NPM2Q86SE8 214 aaKnown RBP20.1■□□□□ 0.81
CDT1-201ENST00000301019 BIVM-ERCC5R4GMW8 1640 aa20.09■□□□□ 0.81
CDT1-201ENST00000301019 PDS5BQ9NTI5 1447 aa20.05■□□□□ 0.8
CDT1-201ENST00000301019 LAS1LQ9Y4W2 734 aaKnown RBP20.05■□□□□ 0.8
CDT1-201ENST00000301019 CEP164Q9UPV0 1460 aa20.02■□□□□ 0.79
CDT1-201ENST00000301019 KANK4Q5T7N3 995 aaPredicted RBP20■□□□□ 0.79
CDT1-201ENST00000301019 EEA1Q15075 1411 aa19.99■□□□□ 0.79
CDT1-201ENST00000301019 SLC24A1O60721 1099 aa19.98■□□□□ 0.79
CDT1-201ENST00000301019 TIMELESSQ9UNS1 1208 aa19.96■□□□□ 0.79
CDT1-201ENST00000301019 MYT1LQ9UL68 1186 aa19.95■□□□□ 0.78
CDT1-201ENST00000301019 FAM9BQ8IZU0 186 aa19.93■□□□□ 0.78
CDT1-201ENST00000301019 DNMBPQ6XZF7 1577 aa19.92■□□□□ 0.78
CDT1-201ENST00000301019 CLIP1P30622 1438 aa19.92■□□□□ 0.78
CDT1-201ENST00000301019 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
CDT1-201ENST00000301019 TOPBP1Q92547 1522 aa19.91■□□□□ 0.78
CDT1-201ENST00000301019 ZBTB47Q9UFB7 747 aaPredicted RBP19.91■□□□□ 0.78
CDT1-201ENST00000301019 KIF21AQ7Z4S6 1674 aa19.91■□□□□ 0.78
CDT1-201ENST00000301019 BRPF3Q9ULD4 1205 aa19.9■□□□□ 0.78
CDT1-201ENST00000301019 URB2Q14146 1524 aaKnown RBP19.9■□□□□ 0.78
CDT1-201ENST00000301019 PPP1R15AO75807 674 aaPredicted RBP19.88■□□□□ 0.77
CDT1-201ENST00000301019 UBE2Q2Q8WVN8 375 aa19.87■□□□□ 0.77
CDT1-201ENST00000301019 ANP32AP39687 249 aaKnown RBP19.87■□□□□ 0.77
CDT1-201ENST00000301019 PPP4R2Q9NY27 417 aa19.86■□□□□ 0.77
CDT1-201ENST00000301019 NEFMP07197 916 aa19.85■□□□□ 0.77
CDT1-201ENST00000301019 POLA1P09884 1462 aaPredicted RBP19.83■□□□□ 0.76
CDT1-201ENST00000301019 KIF27Q86VH2 1401 aa19.82■□□□□ 0.76
CDT1-201ENST00000301019 CCDC184Q52MB2 194 aa19.82■□□□□ 0.76
CDT1-201ENST00000301019 ERICH6BQ5W0A0 696 aa19.81■□□□□ 0.76
CDT1-201ENST00000301019 CUX2O14529 1486 aa19.79■□□□□ 0.76
CDT1-201ENST00000301019 RAD54L2Q9Y4B4 1467 aa19.78■□□□□ 0.76
CDT1-201ENST00000301019 GOLGA3Q08378 1498 aa19.78■□□□□ 0.76
CDT1-201ENST00000301019 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
CDT1-201ENST00000301019 FAM50AQ14320 339 aaKnown RBP19.77■□□□□ 0.76
CDT1-201ENST00000301019 ERCC6Q03468 1493 aa19.77■□□□□ 0.75
CDT1-201ENST00000301019 ATP1B4Q9UN42 357 aaPredicted RBP19.76■□□□□ 0.75
CDT1-201ENST00000301019 IPO9Q96P70 1041 aaKnown RBP19.76■□□□□ 0.75
CDT1-201ENST00000301019 CCER2I3L3R5 266 aa19.74■□□□□ 0.75
CDT1-201ENST00000301019 VPS8Q8N3P4 1428 aa19.72■□□□□ 0.75
CDT1-201ENST00000301019 ABCA10Q8WWZ4 1543 aa19.72■□□□□ 0.75
CDT1-201ENST00000301019 KIF21BO75037 1637 aa19.71■□□□□ 0.75
CDT1-201ENST00000301019 WDR97A6NE52 1622 aa19.7■□□□□ 0.74
CDT1-201ENST00000301019 RAB3GAP2Q9H2M9 1393 aa19.69■□□□□ 0.74
CDT1-201ENST00000301019 RAPGEF2Q9Y4G8 1499 aa19.67■□□□□ 0.74
CDT1-201ENST00000301019 IGF1RP08069 1367 aa19.67■□□□□ 0.74
CDT1-201ENST00000301019 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
CDT1-201ENST00000301019 WDR62O43379 1518 aa19.66■□□□□ 0.74
CDT1-201ENST00000301019 SLC4A3P48751 1232 aa19.66■□□□□ 0.74
CDT1-201ENST00000301019 PKNOX2Q96KN3 472 aa19.65■□□□□ 0.74
CDT1-201ENST00000301019 ARXQ96QS3 562 aa19.64■□□□□ 0.73
CDT1-201ENST00000301019 POLR3GLQ9BT43 218 aa19.64■□□□□ 0.73
CDT1-201ENST00000301019 SKAP1Q86WV1 359 aa19.62■□□□□ 0.73
CDT1-201ENST00000301019 TDRD9Q8NDG6 1382 aaKnown RBP19.62■□□□□ 0.73
CDT1-201ENST00000301019 THOC2Q8NI27 1593 aaKnown RBP19.6■□□□□ 0.73
CDT1-201ENST00000301019 MRS2Q9HD23 443 aa19.6■□□□□ 0.73
CDT1-201ENST00000301019 TARBP1Q13395 1621 aaKnown RBP19.6■□□□□ 0.73
CDT1-201ENST00000301019 ERICH3Q5RHP9 1530 aa19.59■□□□□ 0.73
CDT1-201ENST00000301019 CARMIL1Q5VZK9 1371 aa19.57■□□□□ 0.72
CDT1-201ENST00000301019 GAPVD1Q14C86 1478 aa19.54■□□□□ 0.72
CDT1-201ENST00000301019 ABCA5Q8WWZ7 1642 aa19.54■□□□□ 0.72
CDT1-201ENST00000301019 IFT140Q96RY7 1462 aa19.53■□□□□ 0.72
CDT1-201ENST00000301019 CCNB3Q8WWL7 1395 aa19.52■□□□□ 0.72
CDT1-201ENST00000301019 AKNAQ7Z591 1439 aa19.51■□□□□ 0.71
CDT1-201ENST00000301019 VSIG10Q8N0Z9 540 aa19.51■□□□□ 0.71
CDT1-201ENST00000301019 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
CDT1-201ENST00000301019 AQRO60306 1485 aaKnown RBP eCLIP19.49■□□□□ 0.719e-8■■■■■ 30.8
CDT1-201ENST00000301019 ARID4BQ4LE39 1312 aaPredicted RBP19.48■□□□□ 0.71
CDT1-201ENST00000301019 C11orf95C9JLR9 678 aaPredicted RBP19.48■□□□□ 0.71
CDT1-201ENST00000301019 FRAT1Q92837 279 aaPredicted RBP19.47■□□□□ 0.71
CDT1-201ENST00000301019 ZNF608Q9ULD9 1512 aaPredicted RBP19.46■□□□□ 0.71
CDT1-201ENST00000301019 TONSLQ96HA7 1378 aa19.46■□□□□ 0.71
CDT1-201ENST00000301019 P3H3Q8IVL6 736 aa19.46■□□□□ 0.7
CDT1-201ENST00000301019 MAPKBP1O60336 1514 aa19.44■□□□□ 0.7
CDT1-201ENST00000301019 CUL7Q14999 1698 aa19.44■□□□□ 0.7
CDT1-201ENST00000301019 WASHC2AQ641Q2 1341 aa19.42■□□□□ 0.7
CDT1-201ENST00000301019 GSE1Q14687 1217 aa19.42■□□□□ 0.7
CDT1-201ENST00000301019 GRIN2BQ13224 1484 aa19.39■□□□□ 0.69
CDT1-201ENST00000301019 HSPA5P11021 654 aaKnown RBP19.38■□□□□ 0.69
CDT1-201ENST00000301019 PBRM1Q86U86 1689 aa19.37■□□□□ 0.69
CDT1-201ENST00000301019 ZMYND15Q9H091 742 aa19.36■□□□□ 0.69
CDT1-201ENST00000301019 PDE4AP27815 886 aa19.35■□□□□ 0.69
CDT1-201ENST00000301019 EIF4G3O43432 1585 aaKnown RBP19.35■□□□□ 0.69
CDT1-201ENST00000301019 NFKBIBQ15653 356 aa19.34■□□□□ 0.69
CDT1-201ENST00000301019 DAXXQ9UER7 740 aaPredicted RBP19.34■□□□□ 0.69
CDT1-201ENST00000301019 SETD5Q9C0A6 1442 aa19.33■□□□□ 0.68
CDT1-201ENST00000301019 FHAD1B1AJZ9 1412 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms