RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 PHLDB1Q86UU1 1377 aa39.34■■■■□ 3.89
CBX4-201ENST00000269397 BCANQ96GW7 911 aa39.34■■■■□ 3.89
CBX4-201ENST00000269397 P3H3Q8IVL6 736 aa39.33■■■■□ 3.89
CBX4-201ENST00000269397 ATP1B4Q9UN42 357 aaPredicted RBP39.32■■■■□ 3.88
CBX4-201ENST00000269397 WDR97A6NE52 1622 aa39.3■■■■□ 3.88
CBX4-201ENST00000269397 HIRIP3Q9BW71 556 aaPredicted RBP39.28■■■■□ 3.88
CBX4-201ENST00000269397 LRRC9Q6ZRR7 1453 aa39.28■■■■□ 3.88
CBX4-201ENST00000269397 CARMIL1Q5VZK9 1371 aa39.27■■■■□ 3.88
CBX4-201ENST00000269397 MAP3K1Q13233 1512 aa39.18■■■■□ 3.86
CBX4-201ENST00000269397 FKBP8Q14318 412 aa39.15■■■■□ 3.86
CBX4-201ENST00000269397 FGD5Q6ZNL6 1462 aa39.1■■■■□ 3.85
CBX4-201ENST00000269397 PPP1R15AO75807 674 aaPredicted RBP39.08■■■■□ 3.85
CBX4-201ENST00000269397 PCF11O94913 1555 aaKnown RBP39.03■■■■□ 3.84
CBX4-201ENST00000269397 FHAD1B1AJZ9 1412 aa39.02■■■■□ 3.84
CBX4-201ENST00000269397 TRIM52Q96A61 297 aa39■■■■□ 3.83
CBX4-201ENST00000269397 PRDM2Q13029 1718 aa38.97■■■■□ 3.83
CBX4-201ENST00000269397 FHOD3Q2V2M9 1422 aa38.97■■■■□ 3.83
CBX4-201ENST00000269397 CADPSQ9ULU8 1353 aa38.96■■■■□ 3.83
CBX4-201ENST00000269397 CFAP43Q8NDM7 1665 aa38.93■■■■□ 3.82
CBX4-201ENST00000269397 ANP32EQ9BTT0 268 aa38.88■■■■□ 3.82
CBX4-201ENST00000269397 ANP32CO43423 234 aa38.87■■■■□ 3.81
CBX4-201ENST00000269397 TIMELESSQ9UNS1 1208 aa38.87■■■■□ 3.81
CBX4-201ENST00000269397 NEFLP07196 543 aa38.81■■■■□ 3.8
CBX4-201ENST00000269397 CCER2I3L3R5 266 aa38.77■■■■□ 3.8
CBX4-201ENST00000269397 RAD54L2Q9Y4B4 1467 aa38.75■■■■□ 3.79
CBX4-201ENST00000269397 TONSLQ96HA7 1378 aa38.74■■■■□ 3.79
CBX4-201ENST00000269397 FYCO1Q9BQS8 1478 aa38.72■■■■□ 3.79
CBX4-201ENST00000269397 CASKIN1Q8WXD9 1431 aa38.69■■■■□ 3.78
CBX4-201ENST00000269397 FGD6Q6ZV73 1430 aa38.65■■■■□ 3.78
CBX4-201ENST00000269397 FANCD2Q9BXW9 1451 aa38.63■■■■□ 3.78
CBX4-201ENST00000269397 CCDC18Q5T9S5 1454 aa38.63■■■■□ 3.77
CBX4-201ENST00000269397 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.62■■■■□ 3.771e-8■■■■□ 26.5
CBX4-201ENST00000269397 PTPRKQ15262 1439 aa38.62■■■■□ 3.77
CBX4-201ENST00000269397 RBM19Q9Y4C8 960 aaKnown RBP38.61■■■■□ 3.77
CBX4-201ENST00000269397 MTUS2Q5JR59 1369 aa38.57■■■■□ 3.77
CBX4-201ENST00000269397 EFCAB5A4FU69 1503 aa38.56■■■■□ 3.76
CBX4-201ENST00000269397 AQRO60306 1485 aaKnown RBP eCLIP38.53■■■■□ 3.765e-8■■■■■ 28.1
CBX4-201ENST00000269397 POLA1P09884 1462 aaPredicted RBP38.51■■■■□ 3.75
CBX4-201ENST00000269397 UACAQ9BZF9 1416 aa38.5■■■■□ 3.75
CBX4-201ENST00000269397 ABCA10Q8WWZ4 1543 aa38.5■■■■□ 3.75
CBX4-201ENST00000269397 HFM1A2PYH4 1435 aa38.48■■■■□ 3.75
CBX4-201ENST00000269397 FMN1Q68DA7 1419 aa38.47■■■■□ 3.75
CBX4-201ENST00000269397 PTPN23Q9H3S7 1636 aa38.44■■■■□ 3.74
CBX4-201ENST00000269397 SNAPC4Q5SXM2 1469 aa38.44■■■■□ 3.74
CBX4-201ENST00000269397 HNRNPUQ00839 825 aaKnown RBP eCLIP38.44■■■■□ 3.74
CBX4-201ENST00000269397 TOPBP1Q92547 1522 aa38.43■■■■□ 3.74
CBX4-201ENST00000269397 DNMBPQ6XZF7 1577 aa38.43■■■■□ 3.74
CBX4-201ENST00000269397 CTTNBP2Q8WZ74 1663 aa38.42■■■■□ 3.74
CBX4-201ENST00000269397 IRX6P78412 446 aaPredicted RBP38.42■■■■□ 3.74
CBX4-201ENST00000269397 NAIPQ13075 1403 aa38.41■■■■□ 3.74
CBX4-201ENST00000269397 CC2D2AQ9P2K1 1620 aa38.35■■■■□ 3.73
CBX4-201ENST00000269397 RRP7BPQ9NSQ0 103 aa38.35■■■■□ 3.73
CBX4-201ENST00000269397 NCOA2Q15596 1464 aa38.35■■■■□ 3.73
CBX4-201ENST00000269397 NESP48681 1621 aa38.34■■■■□ 3.73
CBX4-201ENST00000269397 CHIC2Q9UKJ5 165 aa38.34■■■■□ 3.73
CBX4-201ENST00000269397 CUL7Q14999 1698 aa38.33■■■■□ 3.73
CBX4-201ENST00000269397 MYOM3Q5VTT5 1437 aa38.31■■■■□ 3.72
CBX4-201ENST00000269397 LRRIQ1Q96JM4 1722 aa38.31■■■■□ 3.72
CBX4-201ENST00000269397 KDM5BQ9UGL1 1544 aa38.29■■■■□ 3.72
CBX4-201ENST00000269397 HSPA5P11021 654 aaKnown RBP38.27■■■■□ 3.72
CBX4-201ENST00000269397 WASHC2AQ641Q2 1341 aa38.27■■■■□ 3.72
CBX4-201ENST00000269397 TDRD9Q8NDG6 1382 aaKnown RBP38.26■■■■□ 3.72
CBX4-201ENST00000269397 GRIN2BQ13224 1484 aa38.18■■■■□ 3.7
CBX4-201ENST00000269397 MSH5O43196 834 aa38.16■■■■□ 3.7
CBX4-201ENST00000269397 CCDC184Q52MB2 194 aa38.16■■■■□ 3.7
CBX4-201ENST00000269397 SUPT6HQ7KZ85 1726 aaKnown RBP38.14■■■■□ 3.7
CBX4-201ENST00000269397 SAMD9Q5K651 1589 aa38.14■■■■□ 3.7
CBX4-201ENST00000269397 FOXD1Q16676 465 aa38.1■■■■□ 3.69
CBX4-201ENST00000269397 EIF4G2P78344 907 aaKnown RBP eCLIP38.08■■■■□ 3.69
CBX4-201ENST00000269397 DENND4BO75064 1496 aaPredicted RBP38.08■■■■□ 3.69
CBX4-201ENST00000269397 MAGI3Q5TCQ9 1506 aa38.08■■■■□ 3.69
CBX4-201ENST00000269397 EHBP1L1Q8N3D4 1523 aa38.07■■■■□ 3.68
CBX4-201ENST00000269397 URB2Q14146 1524 aaKnown RBP38.05■■■■□ 3.68
CBX4-201ENST00000269397 ARID3CA6NKF2 412 aa38.05■■■■□ 3.68
CBX4-201ENST00000269397 CDK11AQ9UQ88 783 aaPredicted RBP38.05■■■■□ 3.68
CBX4-201ENST00000269397 UGGT2Q9NYU1 1516 aa38.04■■■■□ 3.68
CBX4-201ENST00000269397 C11orf95C9JLR9 678 aaPredicted RBP38.03■■■■□ 3.68
CBX4-201ENST00000269397 BCL11AQ9H165 835 aa38.02■■■■□ 3.68
CBX4-201ENST00000269397 KDM6BO15054 1643 aa38.01■■■■□ 3.68
CBX4-201ENST00000269397 L3MBTL2Q969R5 705 aa38.01■■■■□ 3.68
CBX4-201ENST00000269397 GAPVD1Q14C86 1478 aa38.01■■■■□ 3.67
CBX4-201ENST00000269397 FAM9BQ8IZU0 186 aa38■■■■□ 3.67
CBX4-201ENST00000269397 MPHOSPH9Q99550 1183 aa37.99■■■■□ 3.67
CBX4-201ENST00000269397 CNTLNQ9NXG0 1405 aa37.94■■■■□ 3.66
CBX4-201ENST00000269397 THOC2Q8NI27 1593 aaKnown RBP37.94■■■■□ 3.66
CBX4-201ENST00000269397 ABCA5Q8WWZ7 1642 aa37.93■■■■□ 3.66
CBX4-201ENST00000269397 ARHGEF11O15085 1522 aa37.93■■■■□ 3.66
CBX4-201ENST00000269397 PRKRIP1Q9H875 184 aaPredicted RBP37.9■■■■□ 3.66
CBX4-201ENST00000269397 HECW1Q76N89 1606 aa37.89■■■■□ 3.66
CBX4-201ENST00000269397 MRS2Q9HD23 443 aa37.88■■■■□ 3.65
CBX4-201ENST00000269397 GCC2Q8IWJ2 1684 aa37.88■■■■□ 3.65
CBX4-201ENST00000269397 TCOF1Q13428 1488 aaKnown RBP37.86■■■■□ 3.65
CBX4-201ENST00000269397 FANCIQ9NVI1 1328 aa37.85■■■■□ 3.65
CBX4-201ENST00000269397 CCDC7Q96M83 1385 aa37.85■■■■□ 3.65
CBX4-201ENST00000269397 NBPF8Q3BBV2 869 aa37.83■■■■□ 3.65
CBX4-201ENST00000269397 PPP4R2Q9NY27 417 aa37.83■■■■□ 3.65
CBX4-201ENST00000269397 DNAJC5BQ9UF47 199 aa37.8■■■■□ 3.64
CBX4-201ENST00000269397 LAMC3Q9Y6N6 1575 aa37.8■■■■□ 3.64
CBX4-201ENST00000269397 B4GALNT3Q6L9W6 998 aa37.8■■■■□ 3.64
CBX4-201ENST00000269397 CDK13Q14004 1512 aaKnown RBP37.79■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms