RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GOLGA3Q08378 1498 aa25.46■■□□□ 1.67
UPF1-201ENST00000262803 EIF4G2P78344 907 aaKnown RBP eCLIP25.42■■□□□ 1.666e-13■■■■□ 20.9
UPF1-201ENST00000262803 IRX6P78412 446 aaPredicted RBP25.42■■□□□ 1.66
UPF1-201ENST00000262803 EIF5BO60841 1220 aaKnown RBP25.39■■□□□ 1.66
UPF1-201ENST00000262803 RRP7BPQ9NSQ0 103 aa25.38■■□□□ 1.65
UPF1-201ENST00000262803 CDCA8Q53HL2 280 aa25.38■■□□□ 1.65
UPF1-201ENST00000262803 PLEKHD1A6NEE1 506 aa25.37■■□□□ 1.65
UPF1-201ENST00000262803 PLPPR3Q6T4P5 718 aa25.37■■□□□ 1.65
UPF1-201ENST00000262803 PPP1R15AO75807 674 aaPredicted RBP25.37■■□□□ 1.65
UPF1-201ENST00000262803 NBR1Q14596 966 aa25.34■■□□□ 1.65
UPF1-201ENST00000262803 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.647e-10■■■■■ 33.4
UPF1-201ENST00000262803 TNIKQ9UKE5 1360 aa25.29■■□□□ 1.64
UPF1-201ENST00000262803 CFAP53Q96M91 514 aa25.26■■□□□ 1.63
UPF1-201ENST00000262803 CDK11BP21127 795 aaKnown RBP25.26■■□□□ 1.63
UPF1-201ENST00000262803 CEP164Q9UPV0 1460 aa25.18■■□□□ 1.62
UPF1-201ENST00000262803 NACADO15069 1562 aa25.18■■□□□ 1.62
UPF1-201ENST00000262803 C14orf37Q86TY3 774 aa25.16■■□□□ 1.62
UPF1-201ENST00000262803 ANP32EQ9BTT0 268 aa25.16■■□□□ 1.62
UPF1-201ENST00000262803 KIF27Q86VH2 1401 aa25.13■■□□□ 1.61
UPF1-201ENST00000262803 BAZ1BQ9UIG0 1483 aaKnown RBP25.11■■□□□ 1.61
UPF1-201ENST00000262803 BECN1Q14457 450 aa25.1■■□□□ 1.61
UPF1-201ENST00000262803 DDRGK1Q96HY6 314 aa25.1■■□□□ 1.61
UPF1-201ENST00000262803 NCLP19338 710 aaKnown RBP25.09■■□□□ 1.61
UPF1-201ENST00000262803 HAP1P54257 671 aaPredicted RBP25.08■■□□□ 1.6
UPF1-201ENST00000262803 RGL3Q3MIN7 710 aa25.07■■□□□ 1.6
UPF1-201ENST00000262803 CHMP4BQ9H444 224 aaKnown RBP25.07■■□□□ 1.6
UPF1-201ENST00000262803 ARXQ96QS3 562 aa25.07■■□□□ 1.6
UPF1-201ENST00000262803 KCNH8Q96L42 1107 aa25.06■■□□□ 1.6
UPF1-201ENST00000262803 SUPT16HQ9Y5B9 1047 aaKnown RBP25.06■■□□□ 1.6
UPF1-201ENST00000262803 CFDP1Q9UEE9 299 aaPredicted RBP25.06■■□□□ 1.6
UPF1-201ENST00000262803 GLIPR1L2Q4G1C9 344 aa25.05■■□□□ 1.6
UPF1-201ENST00000262803 SIN3AQ96ST3 1273 aa25.05■■□□□ 1.6
UPF1-201ENST00000262803 A0A0G2JS52 829 aa25.03■■□□□ 1.6
UPF1-201ENST00000262803 CASC1Q6TDU7 716 aa25.03■■□□□ 1.6
UPF1-201ENST00000262803 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
UPF1-201ENST00000262803 ARID4BQ4LE39 1312 aaPredicted RBP25.03■■□□□ 1.6
UPF1-201ENST00000262803 KNSTRNQ9Y448 316 aa25.02■■□□□ 1.6
UPF1-201ENST00000262803 GOLGA6L22H0YM25 854 aa25.02■■□□□ 1.6
UPF1-201ENST00000262803 NUDCQ9Y266 331 aa25■■□□□ 1.59
UPF1-201ENST00000262803 HDGFP51858 240 aaKnown RBP24.99■■□□□ 1.59
UPF1-201ENST00000262803 ZBTB7CA1YPR0 619 aa24.98■■□□□ 1.59
UPF1-201ENST00000262803 PNNQ9H307 717 aaKnown RBP24.98■■□□□ 1.59
UPF1-201ENST00000262803 CARD11Q9BXL7 1154 aa24.97■■□□□ 1.59
UPF1-201ENST00000262803 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
UPF1-201ENST00000262803 MS4A1P11836 297 aa24.94■■□□□ 1.58
UPF1-201ENST00000262803 MAPK8IP3Q9UPT6 1336 aa24.92■■□□□ 1.58
UPF1-201ENST00000262803 KANK1Q14678 1352 aa24.92■■□□□ 1.58
UPF1-201ENST00000262803 CCNB3Q8WWL7 1395 aa24.91■■□□□ 1.58
UPF1-201ENST00000262803 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
UPF1-201ENST00000262803 BAZ1AQ9NRL2 1556 aaPredicted RBP24.89■■□□□ 1.58
UPF1-201ENST00000262803 FHAD1B1AJZ9 1412 aa24.89■■□□□ 1.57
UPF1-201ENST00000262803 CECR2Q9BXF3 1484 aa24.88■■□□□ 1.57
UPF1-201ENST00000262803 ZRSR1Q15695 479 aaKnown RBP24.88■■□□□ 1.57
UPF1-201ENST00000262803 PPP4R2Q9NY27 417 aa24.86■■□□□ 1.57
UPF1-201ENST00000262803 SOGA1O94964 1423 aa24.86■■□□□ 1.57
UPF1-201ENST00000262803 POGKQ9P215 609 aa24.85■■□□□ 1.57
UPF1-201ENST00000262803 FTSJ3Q8IY81 847 aaKnown RBP24.82■■□□□ 1.56
UPF1-201ENST00000262803 TIMELESSQ9UNS1 1208 aa24.76■■□□□ 1.56
UPF1-201ENST00000262803 NEUROD2Q15784 382 aa24.74■■□□□ 1.55
UPF1-201ENST00000262803 CFAP44Q96MT7 982 aa24.73■■□□□ 1.55
UPF1-201ENST00000262803 TRIM44Q96DX7 344 aaPredicted RBP24.73■■□□□ 1.55
UPF1-201ENST00000262803 CARMIL1Q5VZK9 1371 aa24.72■■□□□ 1.55
UPF1-201ENST00000262803 PPM1GO15355 546 aaPredicted RBP24.7■■□□□ 1.55
UPF1-201ENST00000262803 VPS8Q8N3P4 1428 aa24.7■■□□□ 1.54
UPF1-201ENST00000262803 B4GALNT3Q6L9W6 998 aa24.69■■□□□ 1.54
UPF1-201ENST00000262803 TMF1P82094 1093 aa24.67■■□□□ 1.54
UPF1-201ENST00000262803 CUX2O14529 1486 aa24.67■■□□□ 1.54
UPF1-201ENST00000262803 CC2D1BQ5T0F9 858 aaKnown RBP24.67■■□□□ 1.54
UPF1-201ENST00000262803 CCER2I3L3R5 266 aa24.66■■□□□ 1.54
UPF1-201ENST00000262803 RGS3P49796 1198 aa24.66■■□□□ 1.54
UPF1-201ENST00000262803 SETD5Q9C0A6 1442 aa24.65■■□□□ 1.54
UPF1-201ENST00000262803 NPHP1O15259 732 aa24.65■■□□□ 1.54
UPF1-201ENST00000262803 PLEKHG5O94827 1062 aa24.64■■□□□ 1.53
UPF1-201ENST00000262803 DCAF11Q8TEB1 546 aa24.62■■□□□ 1.53
UPF1-201ENST00000262803 GOLGA6L6A8MZA4 724 aa24.62■■□□□ 1.53
UPF1-201ENST00000262803 LAS1LQ9Y4W2 734 aaKnown RBP24.62■■□□□ 1.53
UPF1-201ENST00000262803 CARMIL2Q6F5E8 1435 aa24.62■■□□□ 1.53
UPF1-201ENST00000262803 FRAT1Q92837 279 aaPredicted RBP24.62■■□□□ 1.53
UPF1-201ENST00000262803 KANK4Q5T7N3 995 aaPredicted RBP24.61■■□□□ 1.53
UPF1-201ENST00000262803 NOP58Q9Y2X3 529 aaKnown RBP24.61■■□□□ 1.53
UPF1-201ENST00000262803 CHMP4AQ9BY43 222 aa24.61■■□□□ 1.53
UPF1-201ENST00000262803 TNNT2P45379 298 aaPredicted RBP24.58■■□□□ 1.53
UPF1-201ENST00000262803 LMOD2Q6P5Q4 547 aa24.58■■□□□ 1.53
UPF1-201ENST00000262803 HSPA5P11021 654 aaKnown RBP24.57■■□□□ 1.52
UPF1-201ENST00000262803 OS9Q13438 667 aaPredicted RBP24.57■■□□□ 1.52
UPF1-201ENST00000262803 NRDCO43847 1150 aa24.55■■□□□ 1.52
UPF1-201ENST00000262803 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
UPF1-201ENST00000262803 PTMAP06454 111 aaKnown RBP24.55■■□□□ 1.52
UPF1-201ENST00000262803 MROH2BQ7Z745 1585 aa24.55■■□□□ 1.52
UPF1-201ENST00000262803 CCDC88BA6NC98 1476 aa24.54■■□□□ 1.52
UPF1-201ENST00000262803 GOLGA2Q08379 1002 aa24.54■■□□□ 1.52
UPF1-201ENST00000262803 ARHGAP35Q9NRY4 1499 aa24.53■■□□□ 1.52
UPF1-201ENST00000262803 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
UPF1-201ENST00000262803 CALD1Q05682 793 aaKnown RBP24.49■■□□□ 1.51
UPF1-201ENST00000262803 FGD1P98174 961 aa24.49■■□□□ 1.51
UPF1-201ENST00000262803 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
UPF1-201ENST00000262803 U2SURPO15042 1029 aaKnown RBP24.48■■□□□ 1.51
UPF1-201ENST00000262803 MCCP23508 829 aa24.48■■□□□ 1.51
UPF1-201ENST00000262803 RAB3GAP2Q9H2M9 1393 aa24.47■■□□□ 1.51
UPF1-201ENST00000262803 HDGFL2Q7Z4V5 671 aaPredicted RBP24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms