RNA–Protein interactions for RNA: ENST00000245817.4

TNFSF9-201, Transcript of TNF superfamily member 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFSF9, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9-201ENST00000245817 VPS8Q8N3P4 1428 aa29.29■■■□□ 2.28
TNFSF9-201ENST00000245817 CTTNBP2Q8WZ74 1663 aa29.27■■■□□ 2.28
TNFSF9-201ENST00000245817 CHD1O14646 1710 aa29.25■■■□□ 2.27
TNFSF9-201ENST00000245817 ARHGAP35Q9NRY4 1499 aa29.25■■■□□ 2.27
TNFSF9-201ENST00000245817 ARAP1Q96P48 1450 aa29.22■■■□□ 2.27
TNFSF9-201ENST00000245817 OSCARQ8IYS5 282 aa29.21■■■□□ 2.27
TNFSF9-201ENST00000245817 GRIN2AQ12879 1464 aa29.2■■■□□ 2.27
TNFSF9-201ENST00000245817 APLP2Q06481 763 aa29.19■■■□□ 2.26
TNFSF9-201ENST00000245817 EFCAB5A4FU69 1503 aa29.14■■■□□ 2.26
TNFSF9-201ENST00000245817 PPARGC1BQ86YN6 1023 aaKnown RBP29.14■■■□□ 2.26
TNFSF9-201ENST00000245817 TRIM26Q12899 539 aaPredicted RBP29.13■■■□□ 2.25
TNFSF9-201ENST00000245817 P3H3Q8IVL6 736 aa29.12■■■□□ 2.25
TNFSF9-201ENST00000245817 IQGAP2Q13576 1575 aa29.08■■■□□ 2.25
TNFSF9-201ENST00000245817 PCGF6Q9BYE7 350 aa29.08■■■□□ 2.25
TNFSF9-201ENST00000245817 KIAA0586Q9BVV6 1533 aa29.06■■■□□ 2.24
TNFSF9-201ENST00000245817 NUP160Q12769 1436 aa29.04■■■□□ 2.24
TNFSF9-201ENST00000245817 CEP170Q5SW79 1584 aa29.02■■■□□ 2.24
TNFSF9-201ENST00000245817 FHOD3Q2V2M9 1422 aa29.01■■■□□ 2.24
TNFSF9-201ENST00000245817 SAMD9Q5K651 1589 aa28.97■■■□□ 2.23
TNFSF9-201ENST00000245817 TTBK1Q5TCY1 1321 aaPredicted RBP28.96■■■□□ 2.23
TNFSF9-201ENST00000245817 FMN1Q68DA7 1419 aa28.95■■■□□ 2.22
TNFSF9-201ENST00000245817 UGGT2Q9NYU1 1516 aa28.93■■■□□ 2.22
TNFSF9-201ENST00000245817 CLASP1Q7Z460 1538 aa28.92■■■□□ 2.22
TNFSF9-201ENST00000245817 ATP1B4Q9UN42 357 aaPredicted RBP28.89■■■□□ 2.21
TNFSF9-201ENST00000245817 JPH4Q96JJ6 628 aa28.86■■■□□ 2.21
TNFSF9-201ENST00000245817 CASKIN1Q8WXD9 1431 aa28.82■■■□□ 2.2
TNFSF9-201ENST00000245817 FYCO1Q9BQS8 1478 aa28.81■■■□□ 2.2
TNFSF9-201ENST00000245817 DNAJC5Q9H3Z4 198 aa28.81■■■□□ 2.2
TNFSF9-201ENST00000245817 PCF11O94913 1555 aaKnown RBP28.8■■■□□ 2.2
TNFSF9-201ENST00000245817 CARMIL2Q6F5E8 1435 aa28.78■■■□□ 2.2
TNFSF9-201ENST00000245817 MAP3K1Q13233 1512 aa28.77■■■□□ 2.2
TNFSF9-201ENST00000245817 DISP1Q96F81 1524 aa28.77■■■□□ 2.2
TNFSF9-201ENST00000245817 KIAA0556O60303 1618 aa28.76■■■□□ 2.19
TNFSF9-201ENST00000245817 KANK4Q5T7N3 995 aaPredicted RBP28.74■■■□□ 2.19
TNFSF9-201ENST00000245817 SHROOM2Q13796 1616 aa28.73■■■□□ 2.19
TNFSF9-201ENST00000245817 TIAM1Q13009 1591 aa28.71■■■□□ 2.19
TNFSF9-201ENST00000245817 PRG4Q92954 1404 aaPredicted RBP28.7■■■□□ 2.18
TNFSF9-201ENST00000245817 ARHGEF11O15085 1522 aa28.64■■■□□ 2.18
TNFSF9-201ENST00000245817 LRRC9Q6ZRR7 1453 aa28.61■■■□□ 2.17
TNFSF9-201ENST00000245817 CFAP43Q8NDM7 1665 aa28.6■■■□□ 2.17
TNFSF9-201ENST00000245817 ERCC6L2Q5T890 1561 aa28.59■■■□□ 2.17
TNFSF9-201ENST00000245817 HECW1Q76N89 1606 aa28.59■■■□□ 2.17
TNFSF9-201ENST00000245817 RIMBP3CA6NJZ7 1639 aa28.58■■■□□ 2.17
TNFSF9-201ENST00000245817 RIMBP3BA6NNM3 1639 aa28.58■■■□□ 2.17
TNFSF9-201ENST00000245817 RIMBP3Q9UFD9 1639 aa28.58■■■□□ 2.17
TNFSF9-201ENST00000245817 CCDC18Q5T9S5 1454 aa28.56■■■□□ 2.16
TNFSF9-201ENST00000245817 MTUS2Q5JR59 1369 aa28.52■■■□□ 2.16
TNFSF9-201ENST00000245817 RAPGEF6Q8TEU7 1601 aa28.48■■■□□ 2.15
TNFSF9-201ENST00000245817 EPRSP07814 1512 aaKnown RBP28.48■■■□□ 2.15
TNFSF9-201ENST00000245817 PTPRGP23470 1445 aa28.47■■■□□ 2.15
TNFSF9-201ENST00000245817 CYB5RLQ6IPT4 315 aa28.45■■■□□ 2.15
TNFSF9-201ENST00000245817 ARID3CA6NKF2 412 aa28.44■■■□□ 2.14
TNFSF9-201ENST00000245817 PLB1Q6P1J6 1458 aa28.43■■■□□ 2.14
TNFSF9-201ENST00000245817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.43■■■□□ 2.14
TNFSF9-201ENST00000245817 HNRNPUL2Q1KMD3 747 aaKnown RBP28.43■■■□□ 2.14
TNFSF9-201ENST00000245817 LRRIQ1Q96JM4 1722 aa28.42■■■□□ 2.14
TNFSF9-201ENST00000245817 NUP153P49790 1475 aaKnown RBP28.41■■■□□ 2.14
TNFSF9-201ENST00000245817 CDK11AQ9UQ88 783 aaPredicted RBP28.41■■■□□ 2.14
TNFSF9-201ENST00000245817 CDK13Q14004 1512 aaKnown RBP28.38■■■□□ 2.13
TNFSF9-201ENST00000245817 EHBP1L1Q8N3D4 1523 aa28.38■■■□□ 2.13
TNFSF9-201ENST00000245817 RRBP1Q9P2E9 1410 aaKnown RBP28.37■■■□□ 2.13
TNFSF9-201ENST00000245817 CCNB3Q8WWL7 1395 aa28.35■■■□□ 2.13
TNFSF9-201ENST00000245817 ABCA8O94911 1581 aa28.34■■■□□ 2.13
TNFSF9-201ENST00000245817 PHLDB1Q86UU1 1377 aa28.34■■■□□ 2.13
TNFSF9-201ENST00000245817 UACAQ9BZF9 1416 aa28.28■■■□□ 2.12
TNFSF9-201ENST00000245817 SUPT6HQ7KZ85 1726 aaKnown RBP28.28■■■□□ 2.12
TNFSF9-201ENST00000245817 NCOA2Q15596 1464 aa28.27■■■□□ 2.12
TNFSF9-201ENST00000245817 MAGI3Q5TCQ9 1506 aa28.27■■■□□ 2.12
TNFSF9-201ENST00000245817 FAM50AQ14320 339 aaKnown RBP28.23■■■□□ 2.11
TNFSF9-201ENST00000245817 PLEKHD1A6NEE1 506 aa28.22■■■□□ 2.11
TNFSF9-201ENST00000245817 ATP10BO94823 1461 aa28.2■■■□□ 2.11
TNFSF9-201ENST00000245817 TROQ12816 1431 aaPredicted RBP28.18■■■□□ 2.1
TNFSF9-201ENST00000245817 MYOM3Q5VTT5 1437 aa28.18■■■□□ 2.1
TNFSF9-201ENST00000245817 FGD6Q6ZV73 1430 aa28.16■■■□□ 2.1
TNFSF9-201ENST00000245817 UHRF1BP1LA0JNW5 1464 aa28.16■■■□□ 2.1
TNFSF9-201ENST00000245817 ABCC2Q92887 1545 aa28.15■■■□□ 2.1
TNFSF9-201ENST00000245817 NPM1P06748 294 aaKnown RBP eCLIP28.15■■■□□ 2.1
TNFSF9-201ENST00000245817 ADCY10Q96PN6 1610 aa28.14■■■□□ 2.1
TNFSF9-201ENST00000245817 ITGAEP38570 1179 aa28.14■■■□□ 2.1
TNFSF9-201ENST00000245817 HRCP23327 699 aa28.13■■■□□ 2.09
TNFSF9-201ENST00000245817 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.13■■■□□ 2.099e-8■■■■□ 24.1
TNFSF9-201ENST00000245817 MIA2Q96PC5 1412 aa28.05■■■□□ 2.08
TNFSF9-201ENST00000245817 CCER1Q8TC90 406 aaPredicted RBP28.03■■■□□ 2.08
TNFSF9-201ENST00000245817 KDM5BQ9UGL1 1544 aa28.03■■■□□ 2.08
TNFSF9-201ENST00000245817 KIF14Q15058 1648 aa27.99■■■□□ 2.07
TNFSF9-201ENST00000245817 PTPN23Q9H3S7 1636 aa27.99■■■□□ 2.07
TNFSF9-201ENST00000245817 ZEB1P37275 1124 aaPredicted RBP27.98■■■□□ 2.07
TNFSF9-201ENST00000245817 ZCCHC11Q5TAX3 1644 aaKnown RBP27.96■■■□□ 2.07
TNFSF9-201ENST00000245817 TCOF1Q13428 1488 aaKnown RBP27.95■■■□□ 2.07
TNFSF9-201ENST00000245817 CFDP1Q9UEE9 299 aaPredicted RBP27.94■■■□□ 2.06
TNFSF9-201ENST00000245817 GPATCH8Q9UKJ3 1502 aaKnown RBP27.9■■■□□ 2.06
TNFSF9-201ENST00000245817 ITSN2Q9NZM3 1697 aa27.89■■■□□ 2.06
TNFSF9-201ENST00000245817 MAPKBP1O60336 1514 aa27.87■■■□□ 2.05
TNFSF9-201ENST00000245817 ABCC10Q5T3U5 1492 aa27.87■■■□□ 2.05
TNFSF9-201ENST00000245817 KCNH8Q96L42 1107 aa27.87■■■□□ 2.05
TNFSF9-201ENST00000245817 ASXL2Q76L83 1435 aa27.86■■■□□ 2.05
TNFSF9-201ENST00000245817 ZNF777Q9ULD5 760 aaPredicted RBP27.84■■■□□ 2.05
TNFSF9-201ENST00000245817 SETD5Q9C0A6 1442 aa27.84■■■□□ 2.05
TNFSF9-201ENST00000245817 ZNF644Q9H582 1327 aaPredicted RBP27.8■■■□□ 2.04
TNFSF9-201ENST00000245817 WDR7Q9Y4E6 1490 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms