RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 MAGI1Q96QZ7 1491 aaPredicted RBP23.84■■□□□ 1.41
HDHD3-201ENST00000238379 TRIM26Q12899 539 aaPredicted RBP23.81■■□□□ 1.4
HDHD3-201ENST00000238379 PPARGC1BQ86YN6 1023 aaKnown RBP23.8■■□□□ 1.4
HDHD3-201ENST00000238379 PCGF6Q9BYE7 350 aa23.8■■□□□ 1.4
HDHD3-201ENST00000238379 GRIN2AQ12879 1464 aa23.76■■□□□ 1.39
HDHD3-201ENST00000238379 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
HDHD3-201ENST00000238379 EFCAB5A4FU69 1503 aa23.74■■□□□ 1.39
HDHD3-201ENST00000238379 CHMP7Q8WUX9 453 aaPredicted RBP23.7■■□□□ 1.38
HDHD3-201ENST00000238379 IQGAP2Q13576 1575 aa23.68■■□□□ 1.38
HDHD3-201ENST00000238379 P3H3Q8IVL6 736 aa23.68■■□□□ 1.38
HDHD3-201ENST00000238379 SAMD9Q5K651 1589 aa23.67■■□□□ 1.38
HDHD3-201ENST00000238379 KIAA0586Q9BVV6 1533 aa23.66■■□□□ 1.38
HDHD3-201ENST00000238379 FHOD3Q2V2M9 1422 aa23.65■■□□□ 1.38
HDHD3-201ENST00000238379 APLP2Q06481 763 aa23.64■■□□□ 1.38
HDHD3-201ENST00000238379 FBLN2P98095 1184 aa23.62■■□□□ 1.37
HDHD3-201ENST00000238379 CEP170Q5SW79 1584 aa23.6■■□□□ 1.37
HDHD3-201ENST00000238379 NUP160Q12769 1436 aa23.59■■□□□ 1.37
HDHD3-201ENST00000238379 UGGT2Q9NYU1 1516 aa23.59■■□□□ 1.37
HDHD3-201ENST00000238379 TTBK1Q5TCY1 1321 aaPredicted RBP23.58■■□□□ 1.37
HDHD3-201ENST00000238379 FMN1Q68DA7 1419 aa23.54■■□□□ 1.36
HDHD3-201ENST00000238379 PCF11O94913 1555 aaKnown RBP23.53■■□□□ 1.36
HDHD3-201ENST00000238379 CASKIN1Q8WXD9 1431 aa23.51■■□□□ 1.35
HDHD3-201ENST00000238379 MAP3K1Q13233 1512 aa23.5■■□□□ 1.35
HDHD3-201ENST00000238379 KANK4Q5T7N3 995 aaPredicted RBP23.49■■□□□ 1.35
HDHD3-201ENST00000238379 FYCO1Q9BQS8 1478 aa23.49■■□□□ 1.35
HDHD3-201ENST00000238379 DISP1Q96F81 1524 aa23.48■■□□□ 1.35
HDHD3-201ENST00000238379 CHD1O14646 1710 aa23.46■■□□□ 1.35
HDHD3-201ENST00000238379 TIAM1Q13009 1591 aa23.45■■□□□ 1.35
HDHD3-201ENST00000238379 KIAA0556O60303 1618 aa23.44■■□□□ 1.34
HDHD3-201ENST00000238379 JPH4Q96JJ6 628 aa23.43■■□□□ 1.34
HDHD3-201ENST00000238379 ATP1B4Q9UN42 357 aaPredicted RBP23.4■■□□□ 1.34
HDHD3-201ENST00000238379 CFAP43Q8NDM7 1665 aa23.38■■□□□ 1.33
HDHD3-201ENST00000238379 LRRC9Q6ZRR7 1453 aa23.36■■□□□ 1.33
HDHD3-201ENST00000238379 CARMIL2Q6F5E8 1435 aa23.33■■□□□ 1.33
HDHD3-201ENST00000238379 LRRIQ1Q96JM4 1722 aa23.3■■□□□ 1.32
HDHD3-201ENST00000238379 HECW1Q76N89 1606 aa23.27■■□□□ 1.32
HDHD3-201ENST00000238379 PRG4Q92954 1404 aaPredicted RBP23.26■■□□□ 1.31
HDHD3-201ENST00000238379 SHROOM2Q13796 1616 aa23.25■■□□□ 1.31
HDHD3-201ENST00000238379 CCDC18Q5T9S5 1454 aa23.24■■□□□ 1.31
HDHD3-201ENST00000238379 EPRSP07814 1512 aaKnown RBP23.22■■□□□ 1.31
HDHD3-201ENST00000238379 CLASP1Q7Z460 1538 aa23.22■■□□□ 1.31
HDHD3-201ENST00000238379 RAPGEF6Q8TEU7 1601 aa23.2■■□□□ 1.31
HDHD3-201ENST00000238379 RRBP1Q9P2E9 1410 aaKnown RBP23.2■■□□□ 1.31
HDHD3-201ENST00000238379 NUP153P49790 1475 aaKnown RBP23.18■■□□□ 1.3
HDHD3-201ENST00000238379 MTUS2Q5JR59 1369 aa23.18■■□□□ 1.3
HDHD3-201ENST00000238379 PLB1Q6P1J6 1458 aa23.17■■□□□ 1.3
HDHD3-201ENST00000238379 CDK13Q14004 1512 aaKnown RBP23.16■■□□□ 1.3
HDHD3-201ENST00000238379 PHLDB1Q86UU1 1377 aa23.16■■□□□ 1.3
HDHD3-201ENST00000238379 MAGI3Q5TCQ9 1506 aa23.14■■□□□ 1.29
HDHD3-201ENST00000238379 EHBP1L1Q8N3D4 1523 aa23.13■■□□□ 1.29
HDHD3-201ENST00000238379 CCNB3Q8WWL7 1395 aa23.13■■□□□ 1.29
HDHD3-201ENST00000238379 PTPRGP23470 1445 aa23.12■■□□□ 1.29
HDHD3-201ENST00000238379 ABCA8O94911 1581 aa23.11■■□□□ 1.29
HDHD3-201ENST00000238379 HRCP23327 699 aa23.11■■□□□ 1.29
HDHD3-201ENST00000238379 ARID3CA6NKF2 412 aa23.1■■□□□ 1.29
HDHD3-201ENST00000238379 ERCC6L2Q5T890 1561 aa23.1■■□□□ 1.29
HDHD3-201ENST00000238379 HNRNPUL2Q1KMD3 747 aaKnown RBP23.08■■□□□ 1.29
HDHD3-201ENST00000238379 NCOA2Q15596 1464 aa23.06■■□□□ 1.28
HDHD3-201ENST00000238379 SUPT6HQ7KZ85 1726 aaKnown RBP23.06■■□□□ 1.28
HDHD3-201ENST00000238379 ARHGEF11O15085 1522 aa23.04■■□□□ 1.28
HDHD3-201ENST00000238379 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
HDHD3-201ENST00000238379 CDK11AQ9UQ88 783 aaPredicted RBP23.01■■□□□ 1.27
HDHD3-201ENST00000238379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23■■□□□ 1.27
HDHD3-201ENST00000238379 FGD6Q6ZV73 1430 aa22.98■■□□□ 1.27
HDHD3-201ENST00000238379 UACAQ9BZF9 1416 aa22.98■■□□□ 1.27
HDHD3-201ENST00000238379 ATP10BO94823 1461 aa22.98■■□□□ 1.27
HDHD3-201ENST00000238379 MYOM3Q5VTT5 1437 aa22.98■■□□□ 1.27
HDHD3-201ENST00000238379 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.97■■□□□ 1.27
HDHD3-201ENST00000238379 TROQ12816 1431 aaPredicted RBP22.95■■□□□ 1.26
HDHD3-201ENST00000238379 FAM50AQ14320 339 aaKnown RBP22.93■■□□□ 1.26
HDHD3-201ENST00000238379 ABCC2Q92887 1545 aa22.9■■□□□ 1.26
HDHD3-201ENST00000238379 PLEKHD1A6NEE1 506 aa22.88■■□□□ 1.25
HDHD3-201ENST00000238379 ITGAEP38570 1179 aa22.88■■□□□ 1.25
HDHD3-201ENST00000238379 ADCY10Q96PN6 1610 aa22.86■■□□□ 1.25
HDHD3-201ENST00000238379 UHRF1BP1LA0JNW5 1464 aa22.86■■□□□ 1.25
HDHD3-201ENST00000238379 MIA2Q96PC5 1412 aa22.85■■□□□ 1.25
HDHD3-201ENST00000238379 CCER1Q8TC90 406 aaPredicted RBP22.85■■□□□ 1.25
HDHD3-201ENST00000238379 PTPN23Q9H3S7 1636 aa22.84■■□□□ 1.25
HDHD3-201ENST00000238379 TCOF1Q13428 1488 aaKnown RBP22.83■■□□□ 1.25
HDHD3-201ENST00000238379 KIF14Q15058 1648 aa22.83■■□□□ 1.24
HDHD3-201ENST00000238379 ZEB1P37275 1124 aaPredicted RBP22.82■■□□□ 1.24
HDHD3-201ENST00000238379 KDM5BQ9UGL1 1544 aa22.77■■□□□ 1.24
HDHD3-201ENST00000238379 GPATCH8Q9UKJ3 1502 aaKnown RBP22.76■■□□□ 1.23
HDHD3-201ENST00000238379 ABCC10Q5T3U5 1492 aa22.76■■□□□ 1.23
HDHD3-201ENST00000238379 PTPRKQ15262 1439 aa22.75■■□□□ 1.23
HDHD3-201ENST00000238379 ZCCHC11Q5TAX3 1644 aaKnown RBP22.73■■□□□ 1.23
HDHD3-201ENST00000238379 ITSN2Q9NZM3 1697 aa22.72■■□□□ 1.23
HDHD3-201ENST00000238379 SETD5Q9C0A6 1442 aa22.71■■□□□ 1.23
HDHD3-201ENST00000238379 CFDP1Q9UEE9 299 aaPredicted RBP22.7■■□□□ 1.22
HDHD3-201ENST00000238379 RAB3GAP2Q9H2M9 1393 aa22.69■■□□□ 1.22
HDHD3-201ENST00000238379 ZNF644Q9H582 1327 aaPredicted RBP22.68■■□□□ 1.22
HDHD3-201ENST00000238379 CDC42BPAQ5VT25 1732 aa22.67■■□□□ 1.22
HDHD3-201ENST00000238379 CAMSAP2Q08AD1 1489 aa22.64■■□□□ 1.21
HDHD3-201ENST00000238379 DHX57Q6P158 1386 aaKnown RBP22.63■■□□□ 1.21
HDHD3-201ENST00000238379 HFM1A2PYH4 1435 aa22.63■■□□□ 1.21
HDHD3-201ENST00000238379 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.62■■□□□ 1.21
HDHD3-201ENST00000238379 DAPK1P53355 1430 aa22.61■■□□□ 1.21
HDHD3-201ENST00000238379 DNMT1P26358 1616 aaKnown RBP22.61■■□□□ 1.21
HDHD3-201ENST00000238379 ABCC5O15440 1437 aa22.6■■□□□ 1.21
HDHD3-201ENST00000238379 TTC37Q6PGP7 1564 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms