RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 ADAMTS12P58397 1594 aa19.23■□□□□ 0.67
SF3B6-201ENST00000233468 CEP170Q5SW79 1584 aa19.23■□□□□ 0.67
SF3B6-201ENST00000233468 NUP160Q12769 1436 aa19.17■□□□□ 0.66
SF3B6-201ENST00000233468 FHAD1B1AJZ9 1412 aa19.14■□□□□ 0.65
SF3B6-201ENST00000233468 SHROOM2Q13796 1616 aa19.13■□□□□ 0.65
SF3B6-201ENST00000233468 ERICH3Q5RHP9 1530 aa19.11■□□□□ 0.65
SF3B6-201ENST00000233468 SCAF1Q9H7N4 1312 aaKnown RBP19.09■□□□□ 0.65
SF3B6-201ENST00000233468 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
SF3B6-201ENST00000233468 POTEDQ86YR6 584 aa19.04■□□□□ 0.64
SF3B6-201ENST00000233468 PPP4R3CPQ6ZMV5 832 aa19.03■□□□□ 0.64
SF3B6-201ENST00000233468 PRG4Q92954 1404 aaPredicted RBP19.02■□□□□ 0.64
SF3B6-201ENST00000233468 JPH4Q96JJ6 628 aa19.01■□□□□ 0.63
SF3B6-201ENST00000233468 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
SF3B6-201ENST00000233468 MAPK8IP2Q13387 824 aaPredicted RBP18.97■□□□□ 0.63
SF3B6-201ENST00000233468 RUSC2Q8N2Y8 1516 aa18.96■□□□□ 0.63
SF3B6-201ENST00000233468 IGF1RP08069 1367 aa18.92■□□□□ 0.62
SF3B6-201ENST00000233468 ADCY10Q96PN6 1610 aa18.86■□□□□ 0.61
SF3B6-201ENST00000233468 CARMIL1Q5VZK9 1371 aa18.83■□□□□ 0.61
SF3B6-201ENST00000233468 KIAA0586Q9BVV6 1533 aa18.83■□□□□ 0.6
SF3B6-201ENST00000233468 CUL7Q14999 1698 aa18.82■□□□□ 0.6
SF3B6-201ENST00000233468 FAM69CQ0P6D2 419 aa18.82■□□□□ 0.6
SF3B6-201ENST00000233468 ABCC10Q5T3U5 1492 aa18.8■□□□□ 0.6
SF3B6-201ENST00000233468 NPM1P06748 294 aaKnown RBP eCLIP18.79■□□□□ 0.6
SF3B6-201ENST00000233468 MAPKBP1O60336 1514 aa18.78■□□□□ 0.6
SF3B6-201ENST00000233468 DIP2BQ9P265 1576 aa18.77■□□□□ 0.6
SF3B6-201ENST00000233468 EEA1Q15075 1411 aa18.77■□□□□ 0.6
SF3B6-201ENST00000233468 DMRT2Q9Y5R5 561 aa18.77■□□□□ 0.6
SF3B6-201ENST00000233468 TSPOAP1O95153 1857 aa18.77■□□□□ 0.6
SF3B6-201ENST00000233468 TTBK1Q5TCY1 1321 aaPredicted RBP18.75■□□□□ 0.59
SF3B6-201ENST00000233468 CSRNP3Q8WYN3 585 aa18.73■□□□□ 0.59
SF3B6-201ENST00000233468 RAPGEF2Q9Y4G8 1499 aa18.71■□□□□ 0.59
SF3B6-201ENST00000233468 PTPRGP23470 1445 aa18.69■□□□□ 0.58
SF3B6-201ENST00000233468 IQGAP2Q13576 1575 aa18.65■□□□□ 0.58
SF3B6-201ENST00000233468 KDM6BO15054 1643 aa18.63■□□□□ 0.57
SF3B6-201ENST00000233468 FAM9AQ8IZU1 332 aaPredicted RBP18.63■□□□□ 0.57
SF3B6-201ENST00000233468 TNIKQ9UKE5 1360 aa18.63■□□□□ 0.57
SF3B6-201ENST00000233468 PRXQ9BXM0 1461 aa18.63■□□□□ 0.57
SF3B6-201ENST00000233468 CARMIL2Q6F5E8 1435 aa18.61■□□□□ 0.57
SF3B6-201ENST00000233468 ABCC2Q92887 1545 aa18.6■□□□□ 0.57
SF3B6-201ENST00000233468 DISP1Q96F81 1524 aa18.6■□□□□ 0.57
SF3B6-201ENST00000233468 ASXL2Q76L83 1435 aa18.57■□□□□ 0.56
SF3B6-201ENST00000233468 PPRC1Q5VV67 1664 aaKnown RBP18.57■□□□□ 0.56
SF3B6-201ENST00000233468 KDM4FA0A1W2PPD8 638 aa18.56■□□□□ 0.56
SF3B6-201ENST00000233468 CNKSR2Q8WXI2 1034 aa18.56■□□□□ 0.56
SF3B6-201ENST00000233468 UACAQ9BZF9 1416 aa18.54■□□□□ 0.56
SF3B6-201ENST00000233468 UHRF1BP1LA0JNW5 1464 aa18.53■□□□□ 0.56
SF3B6-201ENST00000233468 UGGT2Q9NYU1 1516 aa18.51■□□□□ 0.55
SF3B6-201ENST00000233468 PLB1Q6P1J6 1458 aa18.51■□□□□ 0.55
SF3B6-201ENST00000233468 GLI2P10070 1586 aa18.51■□□□□ 0.55
SF3B6-201ENST00000233468 KIAA0556O60303 1618 aa18.49■□□□□ 0.55
SF3B6-201ENST00000233468 ZCCHC11Q5TAX3 1644 aaKnown RBP18.49■□□□□ 0.55
SF3B6-201ENST00000233468 NCBP3Q53F19 620 aaKnown RBP18.48■□□□□ 0.55
SF3B6-201ENST00000233468 KDM5BQ9UGL1 1544 aa18.48■□□□□ 0.55
SF3B6-201ENST00000233468 EPRSP07814 1512 aaKnown RBP18.46■□□□□ 0.55
SF3B6-201ENST00000233468 CTTNBP2Q8WZ74 1663 aa18.46■□□□□ 0.55
SF3B6-201ENST00000233468 COL17A1Q9UMD9 1497 aaPredicted RBP18.45■□□□□ 0.54
SF3B6-201ENST00000233468 MAP3K4Q9Y6R4 1608 aa18.45■□□□□ 0.54
SF3B6-201ENST00000233468 UBTFP17480 764 aaKnown RBP18.43■□□□□ 0.54
SF3B6-201ENST00000233468 KIF21BO75037 1637 aa18.42■□□□□ 0.54
SF3B6-201ENST00000233468 GOLGA3Q08378 1498 aa18.41■□□□□ 0.54
SF3B6-201ENST00000233468 WDR7Q9Y4E6 1490 aa18.34■□□□□ 0.53
SF3B6-201ENST00000233468 EHMT2Q96KQ7 1210 aa18.34■□□□□ 0.53
SF3B6-201ENST00000233468 ABCA8O94911 1581 aa18.34■□□□□ 0.53
SF3B6-201ENST00000233468 ADGRL1O94910 1474 aa18.33■□□□□ 0.53
SF3B6-201ENST00000233468 KCNH8Q96L42 1107 aa18.32■□□□□ 0.52
SF3B6-201ENST00000233468 TEX14Q8IWB6 1497 aa18.32■□□□□ 0.52
SF3B6-201ENST00000233468 RANGAP1P46060 587 aaPredicted RBP18.29■□□□□ 0.52
SF3B6-201ENST00000233468 P3H3Q8IVL6 736 aa18.29■□□□□ 0.52
SF3B6-201ENST00000233468 ARID3CA6NKF2 412 aa18.28■□□□□ 0.52
SF3B6-201ENST00000233468 CFAP43Q8NDM7 1665 aa18.27■□□□□ 0.52
SF3B6-201ENST00000233468 CD109Q6YHK3 1445 aa18.26■□□□□ 0.51
SF3B6-201ENST00000233468 KCNA4P22459 653 aa18.26■□□□□ 0.51
SF3B6-201ENST00000233468 RNF216Q9NWF9 866 aaPredicted RBP18.25■□□□□ 0.51
SF3B6-201ENST00000233468 HOXD11P31277 338 aaPredicted RBP18.23■□□□□ 0.51
SF3B6-201ENST00000233468 MAGI3Q5TCQ9 1506 aa18.23■□□□□ 0.51
SF3B6-201ENST00000233468 EFCAB5A4FU69 1503 aa18.21■□□□□ 0.51
SF3B6-201ENST00000233468 ATP10BO94823 1461 aa18.2■□□□□ 0.5
SF3B6-201ENST00000233468 SAMD9Q5K651 1589 aa18.18■□□□□ 0.5
SF3B6-201ENST00000233468 NPM3O75607 178 aaKnown RBP18.17■□□□□ 0.5
SF3B6-201ENST00000233468 FHOD3Q2V2M9 1422 aa18.15■□□□□ 0.5
SF3B6-201ENST00000233468 HECW2Q9P2P5 1572 aa18.14■□□□□ 0.49
SF3B6-201ENST00000233468 RAPGEF6Q8TEU7 1601 aa18.12■□□□□ 0.49
SF3B6-201ENST00000233468 ILDR1Q86SU0 546 aaPredicted RBP18.12■□□□□ 0.49
SF3B6-201ENST00000233468 ABCA9Q8IUA7 1624 aa18.12■□□□□ 0.49
SF3B6-201ENST00000233468 FMN1Q68DA7 1419 aa18.11■□□□□ 0.49
SF3B6-201ENST00000233468 ARAP3Q8WWN8 1544 aa18.1■□□□□ 0.49
SF3B6-201ENST00000233468 ARHGAP35Q9NRY4 1499 aa18.09■□□□□ 0.49
SF3B6-201ENST00000233468 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
SF3B6-201ENST00000233468 CLIP1P30622 1438 aa18.08■□□□□ 0.49
SF3B6-201ENST00000233468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.07■□□□□ 0.48
SF3B6-201ENST00000233468 HNRNPUL2Q1KMD3 747 aaKnown RBP18.07■□□□□ 0.48
SF3B6-201ENST00000233468 LOC105371045A0A1W2PR82 267 aa18.06■□□□□ 0.48
SF3B6-201ENST00000233468 RAPGEF3O95398 923 aa18.06■□□□□ 0.48
SF3B6-201ENST00000233468 NUP153P49790 1475 aaKnown RBP18.06■□□□□ 0.48
SF3B6-201ENST00000233468 ATP1B4Q9UN42 357 aaPredicted RBP18.02■□□□□ 0.48
SF3B6-201ENST00000233468 FRMPD1Q5SYB0 1578 aa18.01■□□□□ 0.47
SF3B6-201ENST00000233468 CEP162Q5TB80 1403 aa18■□□□□ 0.47
SF3B6-201ENST00000233468 ADAMTSL3P82987 1691 aa17.99■□□□□ 0.47
SF3B6-201ENST00000233468 PLEKHD1A6NEE1 506 aa17.98■□□□□ 0.47
SF3B6-201ENST00000233468 CDK11AQ9UQ88 783 aaPredicted RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms