RNA–Protein interactions for RNA: ENSMUST00000187758.6

Usp40-204, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp40, Length 3,977 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-204ENSMUST00000187758 Polr1aO35134 1717 aaKnown RBP11.56□□□□□ -0.56
Usp40-204ENSMUST00000187758 Pbrm1Q8BSQ9 1634 aaKnown RBP11.56□□□□□ -0.56
Usp40-204ENSMUST00000187758 Nup160Q9Z0W3 1402 aaKnown RBP11.54□□□□□ -0.56
Usp40-204ENSMUST00000187758 EprsQ8CGC7 1512 aaKnown RBP11.54□□□□□ -0.56
Usp40-204ENSMUST00000187758 Cc2d2bA0A286YDU8 1405 aa11.53□□□□□ -0.56
Usp40-204ENSMUST00000187758 Rpap1Q80TE0 1409 aa11.53□□□□□ -0.56
Usp40-204ENSMUST00000187758 Ankrd26Q811D2 1581 aa11.53□□□□□ -0.56
Usp40-204ENSMUST00000187758 Cux1P53564 1515 aa11.53□□□□□ -0.56
Usp40-204ENSMUST00000187758 Fyco1Q8VDC1 1437 aa11.53□□□□□ -0.56
Usp40-204ENSMUST00000187758 Eif4g3Q80XI3 1579 aaKnown RBP11.52□□□□□ -0.57
Usp40-204ENSMUST00000187758 Plekhg3Q4VAC9 1341 aa11.51□□□□□ -0.57
Usp40-204ENSMUST00000187758 Arap1Q4LDD4 1452 aa11.51□□□□□ -0.57
Usp40-204ENSMUST00000187758 Erich3F6QRE9 1637 aa11.49□□□□□ -0.57
Usp40-204ENSMUST00000187758 Rusc2Q80U22 1514 aa11.49□□□□□ -0.57
Usp40-204ENSMUST00000187758 UbtfP25976 765 aaKnown RBP11.48□□□□□ -0.57
Usp40-204ENSMUST00000187758 Setd1bQ8CFT2 1985 aa11.48□□□□□ -0.57
Usp40-204ENSMUST00000187758 TchhA0A0B4J1F9 1599 aa11.47□□□□□ -0.57
Usp40-204ENSMUST00000187758 Arhgef5E9Q7D5 1581 aa11.47□□□□□ -0.57
Usp40-204ENSMUST00000187758 Acin1Q9JIX8 1338 aaKnown RBP11.47□□□□□ -0.57
Usp40-204ENSMUST00000187758 CadpsQ80TJ1 1355 aa11.47□□□□□ -0.57
Usp40-204ENSMUST00000187758 Gm7298A0A0N4SVU1 1476 aa11.46□□□□□ -0.57
Usp40-204ENSMUST00000187758 WizO88286 1684 aaKnown RBP11.46□□□□□ -0.57
Usp40-204ENSMUST00000187758 Adamts12Q811B3 1600 aa11.45□□□□□ -0.58
Usp40-204ENSMUST00000187758 Pcf11G3X9Z4 1553 aa11.45□□□□□ -0.58
Usp40-204ENSMUST00000187758 Gpatch8A2A6A1 1505 aa11.44□□□□□ -0.58
Usp40-204ENSMUST00000187758 Arhgap27A2AB59 869 aa11.44□□□□□ -0.58
Usp40-204ENSMUST00000187758 Aebp1Q640N1 1128 aa11.44□□□□□ -0.58
Usp40-204ENSMUST00000187758 CntlnA2AM05 1397 aa11.42□□□□□ -0.58
Usp40-204ENSMUST00000187758 PxdnQ3UQ28 1475 aa11.42□□□□□ -0.58
Usp40-204ENSMUST00000187758 Lmo7E9PYF4 1699 aaKnown RBP11.42□□□□□ -0.58
Usp40-204ENSMUST00000187758 Soga1E1U8D0 1418 aa11.41□□□□□ -0.58
Usp40-204ENSMUST00000187758 BlmO88700 1416 aa11.41□□□□□ -0.58
Usp40-204ENSMUST00000187758 Abca5Q8K448 1642 aa11.41□□□□□ -0.58
Usp40-204ENSMUST00000187758 Tiam1Q60610 1591 aa11.41□□□□□ -0.58
Usp40-204ENSMUST00000187758 Abca16E9PWJ7 1678 aa11.4□□□□□ -0.58
Usp40-204ENSMUST00000187758 Lmod2Q3UHZ5 550 aa11.4□□□□□ -0.59
Usp40-204ENSMUST00000187758 Naip1Q9QWK5 1403 aa11.39□□□□□ -0.59
Usp40-204ENSMUST00000187758 WrnO09053 1401 aa11.36□□□□□ -0.59
Usp40-204ENSMUST00000187758 Kif27Q7M6Z4 1394 aa11.36□□□□□ -0.59
Usp40-204ENSMUST00000187758 Fgd6Q69ZL1 1399 aa11.36□□□□□ -0.59
Usp40-204ENSMUST00000187758 Slx4Q6P1D7 1565 aa11.35□□□□□ -0.59
Usp40-204ENSMUST00000187758 AknaQ80VW7 1404 aa11.34□□□□□ -0.59
Usp40-204ENSMUST00000187758 Abcc2Q8VI47 1543 aa11.34□□□□□ -0.59
Usp40-204ENSMUST00000187758 Peg3Q3URU2 1571 aa11.33□□□□□ -0.6
Usp40-204ENSMUST00000187758 Mier1Q5UAK0 511 aa11.33□□□□□ -0.6
Usp40-204ENSMUST00000187758 Shroom2A2ALU4 1481 aa11.32□□□□□ -0.6
Usp40-204ENSMUST00000187758 Map3k4O08648 1597 aa11.3□□□□□ -0.6
Usp40-204ENSMUST00000187758 Neo1P97798 1493 aa11.29□□□□□ -0.6
Usp40-204ENSMUST00000187758 Gm1043A0A140LJC2 1431 aa11.28□□□□□ -0.6
Usp40-204ENSMUST00000187758 Dnmt1P13864 1620 aaKnown RBP11.27□□□□□ -0.6
Usp40-204ENSMUST00000187758 Jph4Q80WT0 628 aa11.26□□□□□ -0.61
Usp40-204ENSMUST00000187758 Pelp1Q9DBD5 1123 aaKnown RBP11.26□□□□□ -0.61
Usp40-204ENSMUST00000187758 BC005561E9Q5E2 1589 aa11.25□□□□□ -0.61
Usp40-204ENSMUST00000187758 Fkbp15Q6P9Q6 1216 aaKnown RBP11.25□□□□□ -0.61
Usp40-204ENSMUST00000187758 Rapgef6Q5NCJ1 1609 aa11.24□□□□□ -0.61
Usp40-204ENSMUST00000187758 Arhgap31A6X8Z5 1425 aa11.24□□□□□ -0.61
Usp40-204ENSMUST00000187758 Ncoa2Q61026 1462 aa11.23□□□□□ -0.61
Usp40-204ENSMUST00000187758 Ccdc141E9Q8Q6 1531 aa11.23□□□□□ -0.61
Usp40-204ENSMUST00000187758 Gm14025A2AP89 1413 aa11.23□□□□□ -0.61
Usp40-204ENSMUST00000187758 Ncapd3Q6ZQK0 1506 aa11.21□□□□□ -0.61
Usp40-204ENSMUST00000187758 Abcc1O35379 1528 aa11.21□□□□□ -0.62
Usp40-204ENSMUST00000187758 Arhgef12Q8R4H2 1543 aaKnown RBP11.21□□□□□ -0.62
Usp40-204ENSMUST00000187758 Ccnb3Q810T2 1396 aa11.2□□□□□ -0.62
Usp40-204ENSMUST00000187758 Mug1P28665 1476 aa11.2□□□□□ -0.62
Usp40-204ENSMUST00000187758 Fam50aQ9WV03 339 aaKnown RBP11.2□□□□□ -0.62
Usp40-204ENSMUST00000187758 NexmifQ5DTT1 1515 aa11.19□□□□□ -0.62
Usp40-204ENSMUST00000187758 Pabpn1Q8CCS6 302 aaKnown RBP11.19□□□□□ -0.62
Usp40-204ENSMUST00000187758 Dhx57Q6P5D3 1388 aaKnown RBP11.19□□□□□ -0.62
Usp40-204ENSMUST00000187758 NefmP08553 848 aa11.19□□□□□ -0.62
Usp40-204ENSMUST00000187758 Rrbp1Q99PL5 1605 aaKnown RBP11.18□□□□□ -0.62
Usp40-204ENSMUST00000187758 Ncoa3O09000 1398 aa11.17□□□□□ -0.62
Usp40-204ENSMUST00000187758 Arhgef11Q68FM7 1552 aa11.17□□□□□ -0.62
Usp40-204ENSMUST00000187758 Magi1Q6RHR9 1471 aa11.17□□□□□ -0.62
Usp40-204ENSMUST00000187758 Lmtk2Q3TYD6 1471 aa11.16□□□□□ -0.62
Usp40-204ENSMUST00000187758 Zcchc11B2RX14 1644 aaKnown RBP11.14□□□□□ -0.63
Usp40-204ENSMUST00000187758 Fam163aQ8CAA5 168 aa11.14□□□□□ -0.63
Usp40-204ENSMUST00000187758 Chd1P40201 1711 aa11.13□□□□□ -0.63
Usp40-204ENSMUST00000187758 3425401B19RikD3Z1D3 1412 aa11.13□□□□□ -0.63
Usp40-204ENSMUST00000187758 Gcc2Q8CHG3 1679 aa11.13□□□□□ -0.63
Usp40-204ENSMUST00000187758 Mroh2aD3Z750 1679 aa11.12□□□□□ -0.63
Usp40-204ENSMUST00000187758 Fancd2Q80V62 1450 aa11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Prex2Q3LAC4 1598 aa11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Kiaa1551Q5DTW7 1521 aa11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Ifnlr1Q8CGK5 535 aa11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Ythdc2B2RR83 1445 aaKnown RBP11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Cdc42bpaQ3UU96 1719 aa11.1□□□□□ -0.63
Usp40-204ENSMUST00000187758 Gapvd1Q6PAR5 1458 aa11.09□□□□□ -0.63
Usp40-204ENSMUST00000187758 Mia2Q91ZV0 1396 aa11.09□□□□□ -0.63
Usp40-204ENSMUST00000187758 Kdm5bQ80Y84 1544 aa11.08□□□□□ -0.64
Usp40-204ENSMUST00000187758 Cdk11bP24788 784 aaKnown RBP11.08□□□□□ -0.64
Usp40-204ENSMUST00000187758 Mapkbp1Q6NS57 1503 aa11.08□□□□□ -0.64
Usp40-204ENSMUST00000187758 A2mQ6GQT1 1474 aa11.08□□□□□ -0.64
Usp40-204ENSMUST00000187758 Chic2Q9D9G3 165 aa11.08□□□□□ -0.64
Usp40-204ENSMUST00000187758 Ube2uB1AUC4 352 aa11.07□□□□□ -0.64
Usp40-204ENSMUST00000187758 Plekhh2Q8C115 1491 aa11.05□□□□□ -0.64
Usp40-204ENSMUST00000187758 Mtus2Q3UHD3 1353 aa11.05□□□□□ -0.64
Usp40-204ENSMUST00000187758 Igf1rQ60751 1373 aa11.05□□□□□ -0.64
Usp40-204ENSMUST00000187758 Naip2Q9QUK4 1447 aa11.05□□□□□ -0.64
Usp40-204ENSMUST00000187758 Adcy10Q8C0T9 1614 aa11.04□□□□□ -0.64
Usp40-204ENSMUST00000187758 UacaQ8CGB3 1411 aa11.04□□□□□ -0.64
Retrieved 100 of 22,080 RNA–protein pairs in 110.1 ms