RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 SynmQ70IV5 1561 aa13.4□□□□□ -0.26
Trim39-205ENSMUST00000173369 Ap3b1Q9Z1T1 1105 aa13.4□□□□□ -0.27
Trim39-205ENSMUST00000173369 Cc2d2bA0A286YDU8 1405 aa13.39□□□□□ -0.27
Trim39-205ENSMUST00000173369 Cep162Q6ZQ06 1403 aa13.39□□□□□ -0.27
Trim39-205ENSMUST00000173369 Mroh2bQ7M6Y6 1581 aa13.39□□□□□ -0.27
Trim39-205ENSMUST00000173369 Arhgap35Q91YM2 1499 aa13.38□□□□□ -0.27
Trim39-205ENSMUST00000173369 Fkbp15Q6P9Q6 1216 aaKnown RBP13.37□□□□□ -0.27
Trim39-205ENSMUST00000173369 Ifnlr1Q8CGK5 535 aa13.37□□□□□ -0.27
Trim39-205ENSMUST00000173369 Ppargc1bQ8VHJ7 1014 aa13.35□□□□□ -0.27
Trim39-205ENSMUST00000173369 Rpap1Q80TE0 1409 aa13.32□□□□□ -0.28
Trim39-205ENSMUST00000173369 PxdnQ3UQ28 1475 aa13.32□□□□□ -0.28
Trim39-205ENSMUST00000173369 AqrQ8CFQ3 1481 aaKnown RBP13.31□□□□□ -0.28
Trim39-205ENSMUST00000173369 Clip1Q922J3 1391 aa13.31□□□□□ -0.28
Trim39-205ENSMUST00000173369 EprsQ8CGC7 1512 aaKnown RBP13.31□□□□□ -0.28
Trim39-205ENSMUST00000173369 Fgd6Q69ZL1 1399 aa13.29□□□□□ -0.28
Trim39-205ENSMUST00000173369 Carmil1Q6EDY6 1374 aa13.29□□□□□ -0.28
Trim39-205ENSMUST00000173369 Dnajc5P60904 198 aa13.29□□□□□ -0.28
Trim39-205ENSMUST00000173369 WizO88286 1684 aaKnown RBP13.28□□□□□ -0.28
Trim39-205ENSMUST00000173369 Shroom2A2ALU4 1481 aa13.27□□□□□ -0.29
Trim39-205ENSMUST00000173369 CadpsQ80TJ1 1355 aa13.25□□□□□ -0.29
Trim39-205ENSMUST00000173369 Neo1P97798 1493 aa13.24□□□□□ -0.29
Trim39-205ENSMUST00000173369 Cux1P53564 1515 aa13.24□□□□□ -0.29
Trim39-205ENSMUST00000173369 Pbrm1Q8BSQ9 1634 aaKnown RBP13.24□□□□□ -0.29
Trim39-205ENSMUST00000173369 Gm7298A0A0N4SVU1 1476 aa13.2□□□□□ -0.3
Trim39-205ENSMUST00000173369 Soga1E1U8D0 1418 aa13.2□□□□□ -0.3
Trim39-205ENSMUST00000173369 TchhA0A0B4J1F9 1599 aa13.2□□□□□ -0.3
Trim39-205ENSMUST00000173369 Map3k1P53349 1493 aa13.2□□□□□ -0.3
Trim39-205ENSMUST00000173369 WrnO09053 1401 aa13.19□□□□□ -0.3
Trim39-205ENSMUST00000173369 Abca16E9PWJ7 1678 aa13.19□□□□□ -0.3
Trim39-205ENSMUST00000173369 Setd5Q5XJV7 1441 aa13.18□□□□□ -0.3
Trim39-205ENSMUST00000173369 Abcc2Q8VI47 1543 aa13.18□□□□□ -0.3
Trim39-205ENSMUST00000173369 Lmod2Q3UHZ5 550 aa13.18□□□□□ -0.3
Trim39-205ENSMUST00000173369 Eif4g1Q6NZJ6 1600 aaKnown RBP13.18□□□□□ -0.3
Trim39-205ENSMUST00000173369 Ttbk1Q6PCN3 1308 aa13.17□□□□□ -0.3
Trim39-205ENSMUST00000173369 Adamts12Q811B3 1600 aa13.16□□□□□ -0.3
Trim39-205ENSMUST00000173369 Abcc1O35379 1528 aa13.16□□□□□ -0.3
Trim39-205ENSMUST00000173369 Gm156Q58A37 223 aa13.16□□□□□ -0.3
Trim39-205ENSMUST00000173369 Ythdc2B2RR83 1445 aaKnown RBP13.16□□□□□ -0.3
Trim39-205ENSMUST00000173369 Col17a1Q07563 1470 aa13.15□□□□□ -0.3
Trim39-205ENSMUST00000173369 Gapvd1Q6PAR5 1458 aa13.15□□□□□ -0.3
Trim39-205ENSMUST00000173369 BC005561E9Q5E2 1589 aa13.14□□□□□ -0.31
Trim39-205ENSMUST00000173369 Jph4Q80WT0 628 aa13.13□□□□□ -0.31
Trim39-205ENSMUST00000173369 Aebp1Q640N1 1128 aa13.13□□□□□ -0.31
Trim39-205ENSMUST00000173369 Plekhg3Q4VAC9 1341 aa13.13□□□□□ -0.31
Trim39-205ENSMUST00000173369 Gm14025A2AP89 1413 aa13.12□□□□□ -0.31
Trim39-205ENSMUST00000173369 Arid3cA6PWV5 409 aa13.12□□□□□ -0.31
Trim39-205ENSMUST00000173369 PtprtQ99M80 1454 aa13.1□□□□□ -0.31
Trim39-205ENSMUST00000173369 Fyco1Q8VDC1 1437 aa13.1□□□□□ -0.31
Trim39-205ENSMUST00000173369 Dnmt1P13864 1620 aaKnown RBP13.1□□□□□ -0.31
Trim39-205ENSMUST00000173369 Eea1Q8BL66 1411 aa13.08□□□□□ -0.32
Trim39-205ENSMUST00000173369 Ankrd26Q811D2 1581 aa13.07□□□□□ -0.32
Trim39-205ENSMUST00000173369 Cep170Q6A065 1588 aa13.07□□□□□ -0.32
Trim39-205ENSMUST00000173369 Slx4Q6P1D7 1565 aa13.06□□□□□ -0.32
Trim39-205ENSMUST00000173369 Gpatch8A2A6A1 1505 aa13.06□□□□□ -0.32
Trim39-205ENSMUST00000173369 Polr1aO35134 1717 aaKnown RBP13.06□□□□□ -0.32
Trim39-205ENSMUST00000173369 Map3k4O08648 1597 aa13.05□□□□□ -0.32
Trim39-205ENSMUST00000173369 Arhgap31A6X8Z5 1425 aa13.04□□□□□ -0.32
Trim39-205ENSMUST00000173369 Adgrl3Q80TS3 1537 aa13.04□□□□□ -0.32
Trim39-205ENSMUST00000173369 Kif27Q7M6Z4 1394 aa13.03□□□□□ -0.32
Trim39-205ENSMUST00000173369 Chd1P40201 1711 aa13.03□□□□□ -0.32
Trim39-205ENSMUST00000173369 Arap1Q4LDD4 1452 aa13.03□□□□□ -0.32
Trim39-205ENSMUST00000173369 Abca5Q8K448 1642 aa13.02□□□□□ -0.33
Trim39-205ENSMUST00000173369 Ppp1r18Q8BQ30 594 aa13.02□□□□□ -0.33
Trim39-205ENSMUST00000173369 Arhgef12Q8R4H2 1543 aaKnown RBP13.01□□□□□ -0.33
Trim39-205ENSMUST00000173369 Pcdh10E9PXQ7 1057 aa12.98□□□□□ -0.33
Trim39-205ENSMUST00000173369 Pcf11G3X9Z4 1553 aa12.97□□□□□ -0.33
Trim39-205ENSMUST00000173369 Znf608Q56A10 1511 aa12.96□□□□□ -0.33
Trim39-205ENSMUST00000173369 BlmO88700 1416 aa12.96□□□□□ -0.33
Trim39-205ENSMUST00000173369 Zcchc11B2RX14 1644 aaKnown RBP12.95□□□□□ -0.34
Trim39-205ENSMUST00000173369 UbtfP25976 765 aaKnown RBP12.92□□□□□ -0.34
Trim39-205ENSMUST00000173369 Ccdc141E9Q8Q6 1531 aa12.91□□□□□ -0.34
Trim39-205ENSMUST00000173369 Lmo7E9PYF4 1699 aaKnown RBP12.89□□□□□ -0.35
Trim39-205ENSMUST00000173369 Ncoa3O09000 1398 aa12.89□□□□□ -0.35
Trim39-205ENSMUST00000173369 AI481877A2ALV5 1481 aa12.88□□□□□ -0.35
Trim39-205ENSMUST00000173369 Naip1Q9QWK5 1403 aa12.87□□□□□ -0.35
Trim39-205ENSMUST00000173369 Erich3F6QRE9 1637 aa12.86□□□□□ -0.35
Trim39-205ENSMUST00000173369 Arhgef5E9Q7D5 1581 aa12.86□□□□□ -0.35
Trim39-205ENSMUST00000173369 CntlnA2AM05 1397 aa12.86□□□□□ -0.35
Trim39-205ENSMUST00000173369 Rpgrip1Q9EPQ2 1331 aa12.86□□□□□ -0.35
Trim39-205ENSMUST00000173369 Mroh2aD3Z750 1679 aa12.85□□□□□ -0.35
Trim39-205ENSMUST00000173369 Pprc1Q6NZN1 1644 aa12.85□□□□□ -0.35
Trim39-205ENSMUST00000173369 Atp10dQ8K2X1 1416 aa12.84□□□□□ -0.35
Trim39-205ENSMUST00000173369 Rapgef6Q5NCJ1 1609 aa12.84□□□□□ -0.35
Trim39-205ENSMUST00000173369 Lrrc9Q8CDN9 1456 aa12.83□□□□□ -0.35
Trim39-205ENSMUST00000173369 Ak9G3UYQ4 1894 aa12.83□□□□□ -0.36
Trim39-205ENSMUST00000173369 Prex2Q3LAC4 1598 aa12.83□□□□□ -0.36
Trim39-205ENSMUST00000173369 Kdm5bQ80Y84 1544 aa12.83□□□□□ -0.36
Trim39-205ENSMUST00000173369 Magi1Q6RHR9 1471 aa12.83□□□□□ -0.36
Trim39-205ENSMUST00000173369 Gm1043A0A140LJC2 1431 aa12.82□□□□□ -0.36
Trim39-205ENSMUST00000173369 Mug1P28665 1476 aa12.82□□□□□ -0.36
Trim39-205ENSMUST00000173369 Igf1rQ60751 1373 aa12.81□□□□□ -0.36
Trim39-205ENSMUST00000173369 Rrbp1Q99PL5 1605 aaKnown RBP12.81□□□□□ -0.36
Trim39-205ENSMUST00000173369 Ncoa2Q61026 1462 aa12.8□□□□□ -0.36
Trim39-205ENSMUST00000173369 Wdr7Q920I9 1489 aa12.8□□□□□ -0.36
Trim39-205ENSMUST00000173369 Setbp1Q9Z180 1582 aa12.79□□□□□ -0.36
Trim39-205ENSMUST00000173369 Fancd2Q80V62 1450 aa12.78□□□□□ -0.36
Trim39-205ENSMUST00000173369 Depdc5P61460 1591 aa12.77□□□□□ -0.36
Trim39-205ENSMUST00000173369 Tiam1Q60610 1591 aa12.77□□□□□ -0.36
Trim39-205ENSMUST00000173369 Arhgef11Q68FM7 1552 aa12.77□□□□□ -0.36
Trim39-205ENSMUST00000173369 Ccnb3Q810T2 1396 aa12.77□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 51.6 ms