RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Gtf3c6Q9D8P7 227 aa13.65□□□□□ -0.22
Upf3b-201ENSMUST00000076265 Gpatch11Q3UFS4 262 aa13.64□□□□□ -0.23
Upf3b-201ENSMUST00000076265 Mkrn3Q60764 544 aa13.62□□□□□ -0.23
Upf3b-201ENSMUST00000076265 Znf692Q3U381 531 aa13.61□□□□□ -0.23
Upf3b-201ENSMUST00000076265 Supt5hO55201 1082 aaKnown RBP13.61□□□□□ -0.23
Upf3b-201ENSMUST00000076265 Ythdc1E9Q5K9 736 aaKnown RBP13.58□□□□□ -0.23
Upf3b-201ENSMUST00000076265 Hsp90b1P08113 802 aaKnown RBP13.57□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Hs1bp3Q3TC93 395 aa13.57□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Styxl1Q9DAR2 321 aa13.55□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Ubap1lG3UW59 384 aa13.55□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Plcd3Q8K2J0 785 aa13.55□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Irx3P81067 507 aa13.52□□□□□ -0.24
Upf3b-201ENSMUST00000076265 Kdm2aP59997 1161 aa13.52□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Crybg2B7ZCC2 1516 aa13.51□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Baz1aO88379 1555 aa13.5□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Npm1Q61937 292 aaKnown RBP13.49□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Ppp6r1Q7TSI3 856 aa13.49□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Dnajc5P60904 198 aa13.48□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Podxl2Q8CAE9 603 aa13.48□□□□□ -0.25
Upf3b-201ENSMUST00000076265 Brd2Q7JJ13 798 aaKnown RBP13.46□□□□□ -0.26
Upf3b-201ENSMUST00000076265 Ccdc180J3QNE4 1664 aa13.45□□□□□ -0.26
Upf3b-201ENSMUST00000076265 Pds5bQ4VA53 1446 aaKnown RBP13.45□□□□□ -0.26
Upf3b-201ENSMUST00000076265 Irf5P56477 497 aa13.45□□□□□ -0.26
Upf3b-201ENSMUST00000076265 Ccdc136Q3TVA9 1136 aa13.44□□□□□ -0.26
Upf3b-201ENSMUST00000076265 DaxxO35613 739 aa13.44□□□□□ -0.26
Upf3b-201ENSMUST00000076265 Tmed8Q3UHI4 326 aa13.36□□□□□ -0.27
Upf3b-201ENSMUST00000076265 Brpf1B2RRD7 1212 aa13.35□□□□□ -0.27
Upf3b-201ENSMUST00000076265 Zfp91Q62511 572 aa13.35□□□□□ -0.27
Upf3b-201ENSMUST00000076265 Thoc2B1AZI6 1594 aaKnown RBP13.34□□□□□ -0.27
Upf3b-201ENSMUST00000076265 Zcchc6Q5BLK4 1491 aaKnown RBP13.33□□□□□ -0.27
Upf3b-201ENSMUST00000076265 1700019A02RikA0A087WPV9 146 aa13.33□□□□□ -0.28
Upf3b-201ENSMUST00000076265 B4galnt3Q6L8S8 986 aa13.33□□□□□ -0.28
Upf3b-201ENSMUST00000076265 Zfp777B9EKF4 885 aa13.32□□□□□ -0.28
Upf3b-201ENSMUST00000076265 Skida1Q80YR3 822 aa13.32□□□□□ -0.28
Upf3b-201ENSMUST00000076265 Atad2bE9Q166 1460 aaKnown RBP13.32□□□□□ -0.28
Upf3b-201ENSMUST00000076265 TraipQ8VIG6 470 aa13.28□□□□□ -0.28
Upf3b-201ENSMUST00000076265 Gm13695A2AK44 830 aa13.28□□□□□ -0.28
Upf3b-201ENSMUST00000076265 Zcwpw1Q6IR42 630 aa13.26□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Noc3lQ8VI84 807 aaKnown RBP13.24□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Rbm25B2RY56 838 aaKnown RBP13.24□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Hmgb1P63158 215 aaKnown RBP13.24□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Riok3Q9DBU3 519 aaKnown RBP13.23□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Las1lA2BE28 776 aaKnown RBP13.23□□□□□ -0.29
Upf3b-201ENSMUST00000076265 1700123L14RikQ3V2K7 440 aa13.23□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Spryd3E9Q9B3 442 aa13.22□□□□□ -0.29
Upf3b-201ENSMUST00000076265 Fam50aQ9WV03 339 aaKnown RBP13.19□□□□□ -0.3
Upf3b-201ENSMUST00000076265 Ncoa4Q5U4H9 625 aa13.19□□□□□ -0.3
Upf3b-201ENSMUST00000076265 Atf5O70191 283 aa13.17□□□□□ -0.3
Upf3b-201ENSMUST00000076265 Cecr2E9Q2Z1 1453 aa13.16□□□□□ -0.3
Upf3b-201ENSMUST00000076265 PtmaP26350 111 aa13.15□□□□□ -0.3
Upf3b-201ENSMUST00000076265 Smarca2Q6DIC0 1577 aa13.15□□□□□ -0.3
Upf3b-201ENSMUST00000076265 Sh3bp1P55194 680 aa13.14□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Smarca4Q3TKT4 1613 aaKnown RBP13.14□□□□□ -0.31
Upf3b-201ENSMUST00000076265 WdpcpQ8C456 722 aa13.14□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Cc2d2aQ8CFW7 1633 aa13.14□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Ercc6F8VPZ5 1481 aa13.12□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Ggt6Q6PDE7 497 aa13.11□□□□□ -0.31
Upf3b-201ENSMUST00000076265 ErmnQ5EBJ4 281 aa13.11□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Ppp1r18Q8BQ30 594 aa13.11□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Anp32bQ9EST5 272 aaKnown RBP13.1□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Iqgap2Q3UQ44 1575 aa13.09□□□□□ -0.31
Upf3b-201ENSMUST00000076265 Psmd1Q3TXS7 953 aa13.08□□□□□ -0.32
Upf3b-201ENSMUST00000076265 Aebp1Q640N1 1128 aa13.08□□□□□ -0.32
Upf3b-201ENSMUST00000076265 Rbm10Q99KG3 930 aaKnown RBP13.07□□□□□ -0.32
Upf3b-201ENSMUST00000076265 Fam43bA2AM80 330 aa13.02□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Frmpd1A2AKB4 1549 aa13.02□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Fam135aQ6NS59 1506 aa13.02□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Exoc8Q6PGF7 716 aa13.01□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Wdr62Q3U3T8 1523 aa12.99□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Mfap1aC0HKD8 439 aaKnown RBP12.99□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Mfap1bC0HKD9 439 aaKnown RBP12.99□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Wdr66E9Q743 1299 aa12.99□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Wwc1Q5SXA9 1104 aa12.98□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Zeb1Q64318 1117 aa12.96□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Phldb1Q6PDH0 1371 aaKnown RBP12.96□□□□□ -0.33
Upf3b-201ENSMUST00000076265 Ccdc96Q9CR92 584 aa12.96□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Trim26Q99PN3 545 aa12.95□□□□□ -0.34
Upf3b-201ENSMUST00000076265 TprnA2AI08 749 aaKnown RBP12.95□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Rpgrip1Q9EPQ2 1331 aa12.94□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Ifnlr1Q8CGK5 535 aa12.94□□□□□ -0.34
Upf3b-201ENSMUST00000076265 BbxQ8VBW5 907 aa12.94□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Zc3h15Q3TIV5 426 aaKnown RBP12.9□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Stard8Q8K031 1019 aa12.9□□□□□ -0.34
Upf3b-201ENSMUST00000076265 Vgll3P85442 326 aa12.88□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Ubl4bQ9CQ84 188 aa12.88□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Hdac5Q9Z2V6 1113 aa12.88□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Dhx30Q99PU8 1217 aaKnown RBP12.87□□□□□ -0.35
Upf3b-201ENSMUST00000076265 VaspP70460 375 aaKnown RBP12.86□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Rsph6aQ8CDR2 708 aa12.86□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Baz1bQ9Z277 1479 aa12.85□□□□□ -0.35
Upf3b-201ENSMUST00000076265 BcanQ61361 883 aa12.85□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Anks4bQ8K3X6 423 aa12.85□□□□□ -0.35
Upf3b-201ENSMUST00000076265 Sparcl1P70663 650 aa12.83□□□□□ -0.36
Upf3b-201ENSMUST00000076265 CftrP26361 1476 aa12.82□□□□□ -0.36
Upf3b-201ENSMUST00000076265 Rab11fip3Q8CHD8 1047 aa12.82□□□□□ -0.36
Upf3b-201ENSMUST00000076265 CadpsQ80TJ1 1355 aa12.81□□□□□ -0.36
Upf3b-201ENSMUST00000076265 Mtmr7Q9Z2C9 660 aa12.8□□□□□ -0.36
Upf3b-201ENSMUST00000076265 Sox12Q04890 314 aa12.79□□□□□ -0.36
Upf3b-201ENSMUST00000076265 Kcng1A2BDX4 514 aa12.79□□□□□ -0.36
Upf3b-201ENSMUST00000076265 Chrm1P12657 460 aa12.78□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 44.5 ms