RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 AqrQ8CFQ3 1481 aaKnown RBP13.4□□□□□ -0.26
Trim39-201ENSMUST00000042717 Cux1P53564 1515 aa13.39□□□□□ -0.27
Trim39-201ENSMUST00000042717 Arap1Q4LDD4 1452 aa13.37□□□□□ -0.27
Trim39-201ENSMUST00000042717 Lmod2Q3UHZ5 550 aa13.37□□□□□ -0.27
Trim39-201ENSMUST00000042717 EprsQ8CGC7 1512 aaKnown RBP13.36□□□□□ -0.27
Trim39-201ENSMUST00000042717 Ankrd26Q811D2 1581 aa13.35□□□□□ -0.27
Trim39-201ENSMUST00000042717 Acin1Q9JIX8 1338 aaKnown RBP13.35□□□□□ -0.27
Trim39-201ENSMUST00000042717 Rpap1Q80TE0 1409 aa13.34□□□□□ -0.27
Trim39-201ENSMUST00000042717 Arhgap27A2AB59 869 aa13.33□□□□□ -0.27
Trim39-201ENSMUST00000042717 Nup160Q9Z0W3 1402 aaKnown RBP13.32□□□□□ -0.28
Trim39-201ENSMUST00000042717 Fyco1Q8VDC1 1437 aa13.31□□□□□ -0.28
Trim39-201ENSMUST00000042717 Setd1bQ8CFT2 1985 aa13.31□□□□□ -0.28
Trim39-201ENSMUST00000042717 Aebp1Q640N1 1128 aa13.3□□□□□ -0.28
Trim39-201ENSMUST00000042717 WizO88286 1684 aaKnown RBP13.29□□□□□ -0.28
Trim39-201ENSMUST00000042717 CadpsQ80TJ1 1355 aa13.29□□□□□ -0.28
Trim39-201ENSMUST00000042717 Polr1aO35134 1717 aaKnown RBP13.29□□□□□ -0.28
Trim39-201ENSMUST00000042717 BlmO88700 1416 aa13.28□□□□□ -0.28
Trim39-201ENSMUST00000042717 Cc2d2bA0A286YDU8 1405 aa13.28□□□□□ -0.28
Trim39-201ENSMUST00000042717 Gm7298A0A0N4SVU1 1476 aa13.28□□□□□ -0.28
Trim39-201ENSMUST00000042717 Arhgef5E9Q7D5 1581 aa13.28□□□□□ -0.28
Trim39-201ENSMUST00000042717 PxdnQ3UQ28 1475 aa13.27□□□□□ -0.28
Trim39-201ENSMUST00000042717 Pcf11G3X9Z4 1553 aa13.27□□□□□ -0.28
Trim39-201ENSMUST00000042717 Eif4g3Q80XI3 1579 aaKnown RBP13.27□□□□□ -0.29
Trim39-201ENSMUST00000042717 Mier1Q5UAK0 511 aa13.26□□□□□ -0.29
Trim39-201ENSMUST00000042717 Rusc2Q80U22 1514 aa13.25□□□□□ -0.29
Trim39-201ENSMUST00000042717 Pbrm1Q8BSQ9 1634 aaKnown RBP13.25□□□□□ -0.29
Trim39-201ENSMUST00000042717 Erich3F6QRE9 1637 aa13.24□□□□□ -0.29
Trim39-201ENSMUST00000042717 TchhA0A0B4J1F9 1599 aa13.23□□□□□ -0.29
Trim39-201ENSMUST00000042717 Naip1Q9QWK5 1403 aa13.21□□□□□ -0.29
Trim39-201ENSMUST00000042717 Adamts12Q811B3 1600 aa13.21□□□□□ -0.29
Trim39-201ENSMUST00000042717 Fkbp15Q6P9Q6 1216 aaKnown RBP13.21□□□□□ -0.3
Trim39-201ENSMUST00000042717 WrnO09053 1401 aa13.2□□□□□ -0.3
Trim39-201ENSMUST00000042717 AknaQ80VW7 1404 aa13.2□□□□□ -0.3
Trim39-201ENSMUST00000042717 Abca16E9PWJ7 1678 aa13.2□□□□□ -0.3
Trim39-201ENSMUST00000042717 Lmo7E9PYF4 1699 aaKnown RBP13.19□□□□□ -0.3
Trim39-201ENSMUST00000042717 CntlnA2AM05 1397 aa13.19□□□□□ -0.3
Trim39-201ENSMUST00000042717 Tiam1Q60610 1591 aa13.19□□□□□ -0.3
Trim39-201ENSMUST00000042717 Slx4Q6P1D7 1565 aa13.19□□□□□ -0.3
Trim39-201ENSMUST00000042717 Gpatch8A2A6A1 1505 aa13.18□□□□□ -0.3
Trim39-201ENSMUST00000042717 Kif27Q7M6Z4 1394 aa13.18□□□□□ -0.3
Trim39-201ENSMUST00000042717 Abca5Q8K448 1642 aa13.17□□□□□ -0.3
Trim39-201ENSMUST00000042717 Soga1E1U8D0 1418 aa13.17□□□□□ -0.3
Trim39-201ENSMUST00000042717 Pelp1Q9DBD5 1123 aaKnown RBP13.16□□□□□ -0.3
Trim39-201ENSMUST00000042717 Rpgrip1Q9EPQ2 1331 aa13.14□□□□□ -0.31
Trim39-201ENSMUST00000042717 Abcc2Q8VI47 1543 aa13.14□□□□□ -0.31
Trim39-201ENSMUST00000042717 Fgd6Q69ZL1 1399 aa13.11□□□□□ -0.31
Trim39-201ENSMUST00000042717 Neo1P97798 1493 aa13.11□□□□□ -0.31
Trim39-201ENSMUST00000042717 Shroom2A2ALU4 1481 aa13.1□□□□□ -0.31
Trim39-201ENSMUST00000042717 Fam50aQ9WV03 339 aaKnown RBP13.1□□□□□ -0.31
Trim39-201ENSMUST00000042717 Gm1043A0A140LJC2 1431 aa13.08□□□□□ -0.32
Trim39-201ENSMUST00000042717 Ifnlr1Q8CGK5 535 aa13.07□□□□□ -0.32
Trim39-201ENSMUST00000042717 Jph4Q80WT0 628 aa13.06□□□□□ -0.32
Trim39-201ENSMUST00000042717 Arhgap31A6X8Z5 1425 aa13.05□□□□□ -0.32
Trim39-201ENSMUST00000042717 BC005561E9Q5E2 1589 aa13.05□□□□□ -0.32
Trim39-201ENSMUST00000042717 Dnmt1P13864 1620 aaKnown RBP13.03□□□□□ -0.32
Trim39-201ENSMUST00000042717 Ccnb3Q810T2 1396 aa13.02□□□□□ -0.32
Trim39-201ENSMUST00000042717 Map3k4O08648 1597 aa13.02□□□□□ -0.33
Trim39-201ENSMUST00000042717 Peg3Q3URU2 1571 aa13.02□□□□□ -0.33
Trim39-201ENSMUST00000042717 Ncapd3Q6ZQK0 1506 aa13□□□□□ -0.33
Trim39-201ENSMUST00000042717 Rapgef6Q5NCJ1 1609 aa12.99□□□□□ -0.33
Trim39-201ENSMUST00000042717 Ncoa3O09000 1398 aa12.99□□□□□ -0.33
Trim39-201ENSMUST00000042717 Chic2Q9D9G3 165 aa12.99□□□□□ -0.33
Trim39-201ENSMUST00000042717 NexmifQ5DTT1 1515 aa12.99□□□□□ -0.33
Trim39-201ENSMUST00000042717 Gm14025A2AP89 1413 aa12.98□□□□□ -0.33
Trim39-201ENSMUST00000042717 Ccdc141E9Q8Q6 1531 aa12.98□□□□□ -0.33
Trim39-201ENSMUST00000042717 Mug1P28665 1476 aa12.97□□□□□ -0.33
Trim39-201ENSMUST00000042717 Pabpn1Q8CCS6 302 aaKnown RBP12.97□□□□□ -0.33
Trim39-201ENSMUST00000042717 Abcc1O35379 1528 aa12.97□□□□□ -0.33
Trim39-201ENSMUST00000042717 Arhgef12Q8R4H2 1543 aaKnown RBP12.96□□□□□ -0.33
Trim39-201ENSMUST00000042717 3425401B19RikD3Z1D3 1412 aa12.96□□□□□ -0.33
Trim39-201ENSMUST00000042717 Ube2uB1AUC4 352 aa12.95□□□□□ -0.34
Trim39-201ENSMUST00000042717 NefmP08553 848 aa12.94□□□□□ -0.34
Trim39-201ENSMUST00000042717 Ncoa2Q61026 1462 aa12.93□□□□□ -0.34
Trim39-201ENSMUST00000042717 Zcchc11B2RX14 1644 aaKnown RBP12.93□□□□□ -0.34
Trim39-201ENSMUST00000042717 Magi1Q6RHR9 1471 aa12.92□□□□□ -0.34
Trim39-201ENSMUST00000042717 Arhgef11Q68FM7 1552 aa12.92□□□□□ -0.34
Trim39-201ENSMUST00000042717 Eid3Q3V124 375 aa12.91□□□□□ -0.34
Trim39-201ENSMUST00000042717 Mroh2aD3Z750 1679 aa12.9□□□□□ -0.34
Trim39-201ENSMUST00000042717 Prex2Q3LAC4 1598 aa12.9□□□□□ -0.35
Trim39-201ENSMUST00000042717 Lmtk2Q3TYD6 1471 aa12.88□□□□□ -0.35
Trim39-201ENSMUST00000042717 Ythdc2B2RR83 1445 aaKnown RBP12.88□□□□□ -0.35
Trim39-201ENSMUST00000042717 Chd1P40201 1711 aa12.87□□□□□ -0.35
Trim39-201ENSMUST00000042717 Dhx57Q6P5D3 1388 aaKnown RBP12.87□□□□□ -0.35
Trim39-201ENSMUST00000042717 A2mQ6GQT1 1474 aa12.87□□□□□ -0.35
Trim39-201ENSMUST00000042717 Arid3cA6PWV5 409 aa12.86□□□□□ -0.35
Trim39-201ENSMUST00000042717 Rrbp1Q99PL5 1605 aaKnown RBP12.86□□□□□ -0.35
Trim39-201ENSMUST00000042717 Fam163aQ8CAA5 168 aa12.85□□□□□ -0.35
Trim39-201ENSMUST00000042717 Cabp1Q9JLK7 227 aa12.85□□□□□ -0.35
Trim39-201ENSMUST00000042717 Gapvd1Q6PAR5 1458 aa12.84□□□□□ -0.35
Trim39-201ENSMUST00000042717 Tdrd9Q14BI7 1383 aa12.83□□□□□ -0.35
Trim39-201ENSMUST00000042717 Arhgef40Q3UPH7 1517 aa12.83□□□□□ -0.36
Trim39-201ENSMUST00000042717 Cdc42bpaQ3UU96 1719 aa12.83□□□□□ -0.36
Trim39-201ENSMUST00000042717 Fancd2Q80V62 1450 aa12.82□□□□□ -0.36
Trim39-201ENSMUST00000042717 Gcc2Q8CHG3 1679 aa12.82□□□□□ -0.36
Trim39-201ENSMUST00000042717 Kiaa1551Q5DTW7 1521 aa12.82□□□□□ -0.36
Trim39-201ENSMUST00000042717 PtprtQ99M80 1454 aa12.81□□□□□ -0.36
Trim39-201ENSMUST00000042717 Mtus2Q3UHD3 1353 aa12.8□□□□□ -0.36
Trim39-201ENSMUST00000042717 Naip2Q9QUK4 1447 aa12.8□□□□□ -0.36
Trim39-201ENSMUST00000042717 Adcy10Q8C0T9 1614 aa12.8□□□□□ -0.36
Trim39-201ENSMUST00000042717 Mia2Q91ZV0 1396 aa12.79□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 55.9 ms