RNA–Protein interactions for RNA: ENSMUST00000041639.6

Syne1-201, Transcript of Nesprin-1, mousemouse

TSL 1 (best) BASIC

Gene Syne1, Length 6,990 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Syne1-201ENSMUST00000041639 Ythdc1E9Q5K9 736 aaKnown RBP13.09□□□□□ -0.31
Syne1-201ENSMUST00000041639 DekQ7TNV0 380 aaKnown RBP13.08□□□□□ -0.32
Syne1-201ENSMUST00000041639 Trim26Q99PN3 545 aa13.07□□□□□ -0.32
Syne1-201ENSMUST00000041639 P3h3Q8CG70 732 aa13.07□□□□□ -0.32
Syne1-201ENSMUST00000041639 Hsp90aa1P07901 733 aaKnown RBP13.07□□□□□ -0.32
Syne1-201ENSMUST00000041639 1700123L14RikQ3V2K7 440 aa13.06□□□□□ -0.32
Syne1-201ENSMUST00000041639 Rb1cc1Q9ESK9 1588 aa13.06□□□□□ -0.32
Syne1-201ENSMUST00000041639 CatipB9EKE5 520 aa13.05□□□□□ -0.32
Syne1-201ENSMUST00000041639 Fam71e1A1L3C1 212 aa13.05□□□□□ -0.32
Syne1-201ENSMUST00000041639 Lmod3E9QA62 571 aa13.04□□□□□ -0.32
Syne1-201ENSMUST00000041639 Rgl3Q3UYI5 709 aa13.04□□□□□ -0.32
Syne1-201ENSMUST00000041639 CanxP35564 591 aaKnown RBP13.02□□□□□ -0.33
Syne1-201ENSMUST00000041639 Setd5Q5XJV7 1441 aa13.02□□□□□ -0.33
Syne1-201ENSMUST00000041639 Trim30dE9PWL0 497 aa13.01□□□□□ -0.33
Syne1-201ENSMUST00000041639 Clstn2Q9ER65 966 aa13□□□□□ -0.33
Syne1-201ENSMUST00000041639 Fgd1P52734 960 aa12.99□□□□□ -0.33
Syne1-201ENSMUST00000041639 Ofd1Q80Z25 1017 aa12.99□□□□□ -0.33
Syne1-201ENSMUST00000041639 Hsp90ab1P11499 724 aaKnown RBP12.98□□□□□ -0.33
Syne1-201ENSMUST00000041639 Arid4bA2CG63 1314 aaKnown RBP12.95□□□□□ -0.34
Syne1-201ENSMUST00000041639 Grwd1Q810D6 446 aaKnown RBP12.94□□□□□ -0.34
Syne1-201ENSMUST00000041639 Trim44Q9QXA7 346 aa12.94□□□□□ -0.34
Syne1-201ENSMUST00000041639 Apbb1Q9QXJ1 710 aa12.93□□□□□ -0.34
Syne1-201ENSMUST00000041639 Ccdc9Q8VC31 543 aaKnown RBP12.93□□□□□ -0.34
Syne1-201ENSMUST00000041639 Kdm2aP59997 1161 aa12.91□□□□□ -0.34
Syne1-201ENSMUST00000041639 Irx6Q9ER75 438 aa12.9□□□□□ -0.34
Syne1-201ENSMUST00000041639 Neurod2Q62414 383 aa12.87□□□□□ -0.35
Syne1-201ENSMUST00000041639 Safb2Q80YR5 991 aaKnown RBP12.85□□□□□ -0.35
Syne1-201ENSMUST00000041639 Card11Q8CIS0 1159 aa12.85□□□□□ -0.35
Syne1-201ENSMUST00000041639 SafbD3YXK2 937 aaKnown RBP12.84□□□□□ -0.35
Syne1-201ENSMUST00000041639 Plcb2A3KGF7 1181 aa12.83□□□□□ -0.36
Syne1-201ENSMUST00000041639 Dbr1Q923B1 550 aa12.83□□□□□ -0.36
Syne1-201ENSMUST00000041639 PtmaP26350 111 aa12.82□□□□□ -0.36
Syne1-201ENSMUST00000041639 Mroh3A0A1D5RM54 893 aa12.82□□□□□ -0.36
Syne1-201ENSMUST00000041639 Ccdc27Q3V036 639 aa12.81□□□□□ -0.36
Syne1-201ENSMUST00000041639 Eea1Q8BL66 1411 aa12.81□□□□□ -0.36
Syne1-201ENSMUST00000041639 Golga3P55937 1487 aa12.79□□□□□ -0.36
Syne1-201ENSMUST00000041639 IqubQ8CDK3 788 aa12.79□□□□□ -0.36
Syne1-201ENSMUST00000041639 Htatsf1Q8BGC0 757 aa12.78□□□□□ -0.36
Syne1-201ENSMUST00000041639 Srpk2O54781 681 aaKnown RBP12.78□□□□□ -0.36
Syne1-201ENSMUST00000041639 Kif15Q6P9L6 1387 aa12.78□□□□□ -0.36
Syne1-201ENSMUST00000041639 Gm20521D3Z5F7 333 aa12.78□□□□□ -0.36
Syne1-201ENSMUST00000041639 Exosc9Q9JHI7 438 aaKnown RBP12.78□□□□□ -0.36
Syne1-201ENSMUST00000041639 Cwc22Q8C5N3 908 aaKnown RBP12.77□□□□□ -0.36
Syne1-201ENSMUST00000041639 Armcx1Q9CX83 456 aa12.77□□□□□ -0.36
Syne1-201ENSMUST00000041639 Slc4a3P16283 1227 aa12.77□□□□□ -0.37
Syne1-201ENSMUST00000041639 B4galnt3Q6L8S8 986 aa12.77□□□□□ -0.37
Syne1-201ENSMUST00000041639 Spryd3E9Q9B3 442 aa12.76□□□□□ -0.37
Syne1-201ENSMUST00000041639 Wwc2Q6NXJ0 1187 aa12.75□□□□□ -0.37
Syne1-201ENSMUST00000041639 Arhgap27A2AB59 869 aa12.75□□□□□ -0.37
Syne1-201ENSMUST00000041639 Ppm1gQ61074 542 aa12.74□□□□□ -0.37
Syne1-201ENSMUST00000041639 Gm6268A2A3U9 297 aa12.74□□□□□ -0.37
Syne1-201ENSMUST00000041639 Rrp7aQ9D1C9 280 aaKnown RBP12.73□□□□□ -0.37
Syne1-201ENSMUST00000041639 Mapk8ip3Q9ESN9 1337 aa12.73□□□□□ -0.37
Syne1-201ENSMUST00000041639 Hspa5P20029 655 aaKnown RBP12.72□□□□□ -0.37
Syne1-201ENSMUST00000041639 Rsf1E9PWW9 1441 aaKnown RBP12.71□□□□□ -0.37
Syne1-201ENSMUST00000041639 Stk24Q99KH8 431 aa12.7□□□□□ -0.38
Syne1-201ENSMUST00000041639 1700019A02RikA0A087WPV9 146 aa12.69□□□□□ -0.38
Syne1-201ENSMUST00000041639 Mtus2Q3UHD3 1353 aa12.68□□□□□ -0.38
Syne1-201ENSMUST00000041639 Cnga1P29974 684 aa12.67□□□□□ -0.38
Syne1-201ENSMUST00000041639 NgefQ8CHT1 710 aa12.67□□□□□ -0.38
Syne1-201ENSMUST00000041639 Rtn4Q99P72 1162 aaKnown RBP12.67□□□□□ -0.38
Syne1-201ENSMUST00000041639 Baz1aO88379 1555 aa12.66□□□□□ -0.38
Syne1-201ENSMUST00000041639 NacadQ5SWP3 1504 aa12.66□□□□□ -0.38
Syne1-201ENSMUST00000041639 Stag3O70576 1240 aa12.66□□□□□ -0.38
Syne1-201ENSMUST00000041639 Map7O88735 730 aa12.65□□□□□ -0.38
Syne1-201ENSMUST00000041639 Bcl11aQ9QYE3 773 aa12.64□□□□□ -0.39
Syne1-201ENSMUST00000041639 Ccdc18Q640L5 1455 aa12.64□□□□□ -0.39
Syne1-201ENSMUST00000041639 Znf326O88291 580 aa12.63□□□□□ -0.39
Syne1-201ENSMUST00000041639 Mia2Q91ZV0 1396 aa12.63□□□□□ -0.39
Syne1-201ENSMUST00000041639 Rwdd1Q9CQK7 243 aa12.63□□□□□ -0.39
Syne1-201ENSMUST00000041639 Supt16hQ920B9 1047 aa12.62□□□□□ -0.39
Syne1-201ENSMUST00000041639 Casc1Q6TDU8 730 aa12.62□□□□□ -0.39
Syne1-201ENSMUST00000041639 Sin3aQ60520 1274 aaKnown RBP12.61□□□□□ -0.39
Syne1-201ENSMUST00000041639 Tcerg1Q8CGF7 1100 aaKnown RBP12.6□□□□□ -0.39
Syne1-201ENSMUST00000041639 Irx3P81067 507 aa12.6□□□□□ -0.39
Syne1-201ENSMUST00000041639 NudcO35685 332 aaKnown RBP12.6□□□□□ -0.39
Syne1-201ENSMUST00000041639 Hsp90b1P08113 802 aaKnown RBP12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Chmp4bQ9D8B3 224 aaKnown RBP12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Chmp5Q9D7S9 219 aa12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Rundc1Q0VDN7 615 aa12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Ecm2Q5FW85 670 aa12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Pes1Q9EQ61 584 aaKnown RBP12.59□□□□□ -0.39
Syne1-201ENSMUST00000041639 Exoc6Q8R313 802 aa12.58□□□□□ -0.4
Syne1-201ENSMUST00000041639 Iqcf3Q9D498 203 aa12.58□□□□□ -0.4
Syne1-201ENSMUST00000041639 PnnO35691 725 aaKnown RBP12.58□□□□□ -0.4
Syne1-201ENSMUST00000041639 Clstn1Q9EPL2 979 aa12.57□□□□□ -0.4
Syne1-201ENSMUST00000041639 Pkd2O35245 966 aa12.57□□□□□ -0.4
Syne1-201ENSMUST00000041639 Speer4f1Q9D5Q6 258 aa12.57□□□□□ -0.4
Syne1-201ENSMUST00000041639 KnstrnQ9D9Z1 312 aaKnown RBP12.56□□□□□ -0.4
Syne1-201ENSMUST00000041639 Mbd3Q9Z2D8 285 aaKnown RBP12.56□□□□□ -0.4
Syne1-201ENSMUST00000041639 Dnttip2Q8R2M2 758 aaKnown RBP12.55□□□□□ -0.4
Syne1-201ENSMUST00000041639 Plin1Q8CGN5 517 aa12.53□□□□□ -0.4
Syne1-201ENSMUST00000041639 Map4P27546 1125 aaKnown RBP12.53□□□□□ -0.4
Syne1-201ENSMUST00000041639 Erich6bQ9D4S6 220 aa12.53□□□□□ -0.4
Syne1-201ENSMUST00000041639 Dnai1Q8C0M8 701 aa12.53□□□□□ -0.4
Syne1-201ENSMUST00000041639 U2surpQ6NV83 1029 aaKnown RBP12.51□□□□□ -0.41
Syne1-201ENSMUST00000041639 AU015836B2RUM3 263 aa12.51□□□□□ -0.41
Syne1-201ENSMUST00000041639 Ercc6F8VPZ5 1481 aa12.51□□□□□ -0.41
Syne1-201ENSMUST00000041639 Ifit1bl1D3Z6F0 470 aa12.51□□□□□ -0.41
Syne1-201ENSMUST00000041639 EspnQ9ET47 871 aa12.5□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 41.8 ms