RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 PKIAP61925 76 aa11.54□□□□□ -0.56
PNKP-230ENST00000638016 MIAQ16674 131 aa11.54□□□□□ -0.56
PNKP-230ENST00000638016 FAM231DQ6ZW35 169 aa11.54□□□□□ -0.56
PNKP-230ENST00000638016 FAM210AQ96ND0 272 aa11.54□□□□□ -0.56
PNKP-230ENST00000638016 SMIM7Q9BQ49 75 aa11.54□□□□□ -0.56
PNKP-230ENST00000638016 GAS8-AS1O95177 125 aa11.53□□□□□ -0.56
PNKP-230ENST00000638016 SRP19P09132 144 aaKnown RBP11.53□□□□□ -0.56
PNKP-230ENST00000638016 SCXQ7RTU7 201 aa11.53□□□□□ -0.56
PNKP-230ENST00000638016 LINC01551Q86U37 167 aa11.53□□□□□ -0.56
PNKP-230ENST00000638016 PRSS1P07477 247 aa11.52□□□□□ -0.57
PNKP-230ENST00000638016 AMTP48728 403 aa11.52□□□□□ -0.57
PNKP-230ENST00000638016 REG3AQ06141 175 aa11.52□□□□□ -0.57
PNKP-230ENST00000638016 SRRM2Q9UQ35 2752 aaKnown RBP11.52□□□□□ -0.57
PNKP-230ENST00000638016 ZNF727A8MUV8 499 aa11.51□□□□□ -0.57
PNKP-230ENST00000638016 A8MWL6 223 aa11.51□□□□□ -0.57
PNKP-230ENST00000638016 FAM229AH3BQW9 127 aa11.51□□□□□ -0.57
PNKP-230ENST00000638016 COTL1Q14019 142 aa11.51□□□□□ -0.57
PNKP-230ENST00000638016 C9JQL5 133 aa11.5□□□□□ -0.57
PNKP-230ENST00000638016 LINC00528Q8N1L1 170 aa11.5□□□□□ -0.57
PNKP-230ENST00000638016 CT83Q5H943 113 aa11.49□□□□□ -0.57
PNKP-230ENST00000638016 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.48□□□□□ -0.57
PNKP-230ENST00000638016 IGKV2-29A2NJV5 120 aaPredicted RBP11.48□□□□□ -0.57
PNKP-230ENST00000638016 HIGD1CA8MV81 97 aa11.48□□□□□ -0.57
PNKP-230ENST00000638016 UBE2L6O14933 153 aa11.48□□□□□ -0.57
PNKP-230ENST00000638016 SRSF3P84103 164 aaKnown RBP11.48□□□□□ -0.57
PNKP-230ENST00000638016 C14orf177Q52M58 125 aa11.48□□□□□ -0.57
PNKP-230ENST00000638016 DMBT1Q9UGM3 2413 aaPredicted RBP11.48□□□□□ -0.57
PNKP-230ENST00000638016 IGKV3OR2-268A0A0C4DH90 116 aa11.47□□□□□ -0.57
PNKP-230ENST00000638016 A0A1B0GUV1 79 aa11.47□□□□□ -0.57
PNKP-230ENST00000638016 SMIM15Q7Z3B0 74 aa11.47□□□□□ -0.57
PNKP-230ENST00000638016 CIRBP-AS1Q8TBR5 109 aa11.47□□□□□ -0.57
PNKP-230ENST00000638016 TSKUQ8WUA8 353 aa11.47□□□□□ -0.57
PNKP-230ENST00000638016 SDHAF1A6NFY7 115 aa11.46□□□□□ -0.57
PNKP-230ENST00000638016 RNF185Q96GF1 192 aa11.46□□□□□ -0.57
PNKP-230ENST00000638016 CHAC1Q9BUX1 264 aa11.46□□□□□ -0.57
PNKP-230ENST00000638016 OSTCQ9NRP0 149 aa11.46□□□□□ -0.57
PNKP-230ENST00000638016 V9GYV3 84 aa11.46□□□□□ -0.57
PNKP-230ENST00000638016 RPS10P46783 165 aaKnown RBP11.45□□□□□ -0.58
PNKP-230ENST00000638016 ISOC2Q96AB3 205 aa11.45□□□□□ -0.58
PNKP-230ENST00000638016 A0A1B0GUT8 65 aa11.44□□□□□ -0.58
PNKP-230ENST00000638016 NDUFS6O75380 124 aaKnown RBP11.44□□□□□ -0.58
PNKP-230ENST00000638016 RPL23P62829 140 aaKnown RBP11.44□□□□□ -0.58
PNKP-230ENST00000638016 AMN1Q8IY45 258 aa11.44□□□□□ -0.58
PNKP-230ENST00000638016 BORCS7Q96B45 105 aa11.44□□□□□ -0.58
PNKP-230ENST00000638016 FAM231BA6NCW3 169 aa11.43□□□□□ -0.58
PNKP-230ENST00000638016 SMKR1H3BMG3 65 aa11.43□□□□□ -0.58
PNKP-230ENST00000638016 PANO1I0J062 215 aa11.43□□□□□ -0.58
PNKP-230ENST00000638016 APCSP02743 223 aa11.43□□□□□ -0.58
PNKP-230ENST00000638016 NCR2O95944 276 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 RAB4AP20338 218 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 ADIRFQ15847 76 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 RNASEKQ6P5S7 137 aaKnown RBP11.42□□□□□ -0.58
PNKP-230ENST00000638016 TEX261Q6UWH6 196 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 NUP35Q8NFH5 326 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 TMEM191AQ9H0A3 160 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 TMEM242Q9NWH2 141 aa11.42□□□□□ -0.58
PNKP-230ENST00000638016 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.42□□□□□ -0.58
PNKP-230ENST00000638016 TRAV8-4A0A0B4J246 113 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 TRBV6-5A0A0K0K1A5 114 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 GAGE12HA6NDE8 117 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 TSHBP01222 138 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 SLPIP03973 132 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 FGF6P10767 208 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 PMCHP20382 165 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 TMEM241Q24JQ0 296 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 AMMECR1LQ6DCA0 310 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 C9orf163Q8N9P6 203 aa11.41□□□□□ -0.58
PNKP-230ENST00000638016 hDV102S1A0JD36 115 aa11.4□□□□□ -0.58
PNKP-230ENST00000638016 PLA2G1BP04054 148 aaKnown RBP11.4□□□□□ -0.58
PNKP-230ENST00000638016 KRTAP10-4P60372 401 aaPredicted RBP11.4□□□□□ -0.58
PNKP-230ENST00000638016 LRP1Q07954 4544 aaKnown RBP11.39□□□□□ -0.59
PNKP-230ENST00000638016 I3L3M4 83 aa11.39□□□□□ -0.59
PNKP-230ENST00000638016 DGAT2L7PQ6IED9 249 aa11.39□□□□□ -0.59
PNKP-230ENST00000638016 C15orf56Q8N910 161 aa11.39□□□□□ -0.59
PNKP-230ENST00000638016 ST20Q9HBF5 79 aa11.39□□□□□ -0.59
PNKP-230ENST00000638016 NAT8Q9UHE5 227 aa11.38□□□□□ -0.59
PNKP-230ENST00000638016 ESDP10768 282 aa11.37□□□□□ -0.59
PNKP-230ENST00000638016 POLR2KP53803 58 aaKnown RBP11.37□□□□□ -0.59
PNKP-230ENST00000638016 HIGD2BQ4VC39 106 aa11.37□□□□□ -0.59
PNKP-230ENST00000638016 FAM74A3Q4VXF1 159 aa11.37□□□□□ -0.59
PNKP-230ENST00000638016 SDIM1Q6ZPB5 146 aa11.37□□□□□ -0.59
PNKP-230ENST00000638016 CLRN3Q8NCR9 226 aa11.37□□□□□ -0.59
PNKP-230ENST00000638016 CHCHD10Q8WYQ3 142 aaPredicted RBP11.37□□□□□ -0.59
PNKP-230ENST00000638016 RIGQ13278 110 aa11.36□□□□□ -0.59
PNKP-230ENST00000638016 PEA15Q15121 130 aa11.36□□□□□ -0.59
PNKP-230ENST00000638016 MRAP2Q96G30 205 aa11.36□□□□□ -0.59
PNKP-230ENST00000638016 NAT8BQ9UHF3 227 aa11.36□□□□□ -0.59
PNKP-230ENST00000638016 CHTF8P0CG12 524 aa11.35□□□□□ -0.59
PNKP-230ENST00000638016 CNBPP62633 177 aaKnown RBP11.35□□□□□ -0.59
PNKP-230ENST00000638016 NRACQ8N912 160 aa11.35□□□□□ -0.59
PNKP-230ENST00000638016 FAT3Q8TDW7 4589 aa11.35□□□□□ -0.59
PNKP-230ENST00000638016 PKHD1L1Q86WI1 4243 aa11.34□□□□□ -0.59
PNKP-230ENST00000638016 SMIM27A0A1W2PRY6 76 aa11.34□□□□□ -0.59
PNKP-230ENST00000638016 H7C423 109 aa11.34□□□□□ -0.59
PNKP-230ENST00000638016 TRBV27A0A0K0K1C4 114 aa11.33□□□□□ -0.6
PNKP-230ENST00000638016 CAMPP49913 170 aa11.33□□□□□ -0.6
PNKP-230ENST00000638016 FOXI1Q12951 378 aa11.33□□□□□ -0.6
PNKP-230ENST00000638016 MRPL51Q4U2R6 128 aaKnown RBP11.33□□□□□ -0.6
PNKP-230ENST00000638016 OR5A1Q8NGJ0 315 aa11.33□□□□□ -0.6
PNKP-230ENST00000638016 ZNF25P17030 456 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms