RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 I3L3M4 83 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 CRPP02741 224 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 PMCHP20382 165 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 RBX1P62877 108 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 ATP5L2Q7Z4Y8 100 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 Q8N976 141 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 DEFB104AQ8WTQ1 72 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 SEC11CQ9BY50 192 aa13.83□□□□□ -0.2
CLN3-240ENST00000631023 LINC00862A6NCI5 91 aa13.82□□□□□ -0.2
CLN3-240ENST00000631023 PGPEP1Q9NXJ5 209 aa13.82□□□□□ -0.2
CLN3-240ENST00000631023 A0A1B0GXF2 115 aa13.81□□□□□ -0.2
CLN3-240ENST00000631023 GAS8-AS1O95177 125 aa13.81□□□□□ -0.2
CLN3-240ENST00000631023 ADCYAP1P18509 176 aa13.81□□□□□ -0.2
CLN3-240ENST00000631023 TMEM70Q9BUB7 260 aa13.81□□□□□ -0.2
CLN3-240ENST00000631023 IGKV2D-24A0A075B6R9 120 aa13.8□□□□□ -0.2
CLN3-240ENST00000631023 A0A1B0GUV1 79 aa13.8□□□□□ -0.2
CLN3-240ENST00000631023 RPS10P46783 165 aaKnown RBP13.8□□□□□ -0.2
CLN3-240ENST00000631023 KRTAP10-2P60368 255 aa13.8□□□□□ -0.2
CLN3-240ENST00000631023 MRPL51Q4U2R6 128 aaKnown RBP13.8□□□□□ -0.2
CLN3-240ENST00000631023 APCSP02743 223 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 DNAH11Q96DT5 4516 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 LRCOL1A6NCL2 159 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 SMKR1H3BMG3 65 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 CKS2P33552 79 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 ENHOQ6UWT2 76 aa13.79□□□□□ -0.2
CLN3-240ENST00000631023 TRBV27A0A0K0K1C4 114 aa13.78□□□□□ -0.2
CLN3-240ENST00000631023 POLR2KP53803 58 aaKnown RBP13.78□□□□□ -0.2
CLN3-240ENST00000631023 MIAQ16674 131 aa13.78□□□□□ -0.2
CLN3-240ENST00000631023 CDPF1Q6NVV7 123 aa13.78□□□□□ -0.2
CLN3-240ENST00000631023 LINC00269Q8N2A0 174 aa13.78□□□□□ -0.2
CLN3-240ENST00000631023 C1orf43Q9BWL3 253 aa13.78□□□□□ -0.2
CLN3-240ENST00000631023 H7C423 109 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 VCYO14598 125 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 SUMO2P61956 95 aaKnown RBP13.77□□□□□ -0.21
CLN3-240ENST00000631023 NRACQ8N912 160 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 BTF3L4Q96K17 158 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 IMMP2LQ96T52 175 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 CTDSP1Q9GZU7 261 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 PRR34Q9NV39 138 aa13.77□□□□□ -0.21
CLN3-240ENST00000631023 PPBPP02775 128 aa13.75□□□□□ -0.21
CLN3-240ENST00000631023 AMMECR1LQ6DCA0 310 aa13.75□□□□□ -0.21
CLN3-240ENST00000631023 C20orf78Q9BR46 151 aa13.75□□□□□ -0.21
CLN3-240ENST00000631023 TMEM242Q9NWH2 141 aa13.75□□□□□ -0.21
CLN3-240ENST00000631023 TRBV24-1A0A075B6N3 115 aa13.74□□□□□ -0.21
CLN3-240ENST00000631023 TSHBP01222 138 aa13.74□□□□□ -0.21
CLN3-240ENST00000631023 REG3AQ06141 175 aa13.74□□□□□ -0.21
CLN3-240ENST00000631023 C20orf203Q8NBC4 194 aa13.74□□□□□ -0.21
CLN3-240ENST00000631023 KIR2DL4Q99706 377 aa13.74□□□□□ -0.21
CLN3-240ENST00000631023 DYNC1H1Q14204 4646 aaKnown RBP13.74□□□□□ -0.21
CLN3-240ENST00000631023 IGLV4-60A0A075B6I1 120 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 D6R8Y8 96 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 FCER1GP30273 86 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 CLPSL2Q6UWE3 100 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 Q8N814 137 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 MAPKAPK5-AS1Q8N8E1 139 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 BAALCQ8WXS3 180 aa13.73□□□□□ -0.21
CLN3-240ENST00000631023 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.72□□□□□ -0.21
CLN3-240ENST00000631023 IGKV2-29A2NJV5 120 aaPredicted RBP13.72□□□□□ -0.21
CLN3-240ENST00000631023 C10orf91Q5T1B1 145 aa13.72□□□□□ -0.21
CLN3-240ENST00000631023 RNASEKQ6P5S7 137 aaKnown RBP13.72□□□□□ -0.21
CLN3-240ENST00000631023 NTN5Q8WTR8 489 aaPredicted RBP13.72□□□□□ -0.21
CLN3-240ENST00000631023 TNFRSF6BO95407 300 aa13.71□□□□□ -0.21
CLN3-240ENST00000631023 ESDP10768 282 aa13.71□□□□□ -0.21
CLN3-240ENST00000631023 ORMDL3Q8N138 153 aa13.71□□□□□ -0.21
CLN3-240ENST00000631023 CARHSP1Q9Y2V2 147 aaKnown RBP13.71□□□□□ -0.21
CLN3-240ENST00000631023 TRAV8-4A0A0B4J246 113 aa13.71□□□□□ -0.22
CLN3-240ENST00000631023 PHOX2AO14813 284 aa13.71□□□□□ -0.22
CLN3-240ENST00000631023 FGF6P10767 208 aa13.71□□□□□ -0.22
CLN3-240ENST00000631023 ZNF25P17030 456 aaPredicted RBP13.71□□□□□ -0.22
CLN3-240ENST00000631023 LECT2O14960 151 aa13.7□□□□□ -0.22
CLN3-240ENST00000631023 FUSP35637 526 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLN3-240ENST00000631023 RPL32P62910 135 aaKnown RBP13.7□□□□□ -0.22
CLN3-240ENST00000631023 TMEM136Q6ZRR5 245 aa13.7□□□□□ -0.22
CLN3-240ENST00000631023 TMEM101Q96IK0 257 aa13.7□□□□□ -0.22
CLN3-240ENST00000631023 TRAV9-1A0A075B6T8 112 aa13.69□□□□□ -0.22
CLN3-240ENST00000631023 C7orf77A4D0Y5 90 aa13.69□□□□□ -0.22
CLN3-240ENST00000631023 TCAPO15273 167 aa13.69□□□□□ -0.22
CLN3-240ENST00000631023 S100PP25815 95 aa13.69□□□□□ -0.22
CLN3-240ENST00000631023 IGLV5-52A0A0A0MRZ9 124 aa13.68□□□□□ -0.22
CLN3-240ENST00000631023 WFDC2Q14508 124 aa13.68□□□□□ -0.22
CLN3-240ENST00000631023 NPYP01303 97 aa13.67□□□□□ -0.22
CLN3-240ENST00000631023 SMAGPQ0VAQ4 97 aa13.67□□□□□ -0.22
CLN3-240ENST00000631023 RHEBQ15382 184 aa13.67□□□□□ -0.22
CLN3-240ENST00000631023 CLRN3Q8NCR9 226 aa13.67□□□□□ -0.22
CLN3-240ENST00000631023 PRELID3AQ96N28 172 aa13.67□□□□□ -0.22
CLN3-240ENST00000631023 IGLV10-54A0A075B6I4 117 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 HLA-DQA1P01909 254 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 SMIM2Q9BVW6 85 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 GCSHP23434 173 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 C14orf177Q52M58 125 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 OR5A1Q8NGJ0 315 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 LAMTOR2Q9Y2Q5 125 aa13.66□□□□□ -0.22
CLN3-240ENST00000631023 CDK2AP2O75956 126 aa13.65□□□□□ -0.22
CLN3-240ENST00000631023 NDUFA5Q16718 116 aa13.65□□□□□ -0.22
CLN3-240ENST00000631023 MRPL52Q86TS9 123 aaKnown RBP13.65□□□□□ -0.22
CLN3-240ENST00000631023 TMEM18Q96B42 140 aa13.65□□□□□ -0.22
CLN3-240ENST00000631023 RPS10P5Q9NQ39 176 aa13.65□□□□□ -0.22
CLN3-240ENST00000631023 DGAT2L7PQ6IED9 249 aa13.64□□□□□ -0.23
CLN3-240ENST00000631023 KIAA1109Q2LD37 5005 aa13.63□□□□□ -0.23
CLN3-240ENST00000631023 IGKV3OR2-268A0A0C4DH90 116 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms