RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 RPS10P46783 165 aaKnown RBP17.28■□□□□ 0.36
TRIM28-204ENST00000594806 POLR2KP53803 58 aaKnown RBP17.28■□□□□ 0.36
TRIM28-204ENST00000594806 Q0VG73 95 aa17.28■□□□□ 0.36
TRIM28-204ENST00000594806 RMI2Q96E14 147 aa17.28■□□□□ 0.36
TRIM28-204ENST00000594806 Q9HAA7 133 aa17.28■□□□□ 0.36
TRIM28-204ENST00000594806 COX11Q9Y6N1 276 aa17.28■□□□□ 0.36
TRIM28-204ENST00000594806 TRAV9-1A0A075B6T8 112 aa17.27■□□□□ 0.36
TRIM28-204ENST00000594806 TRBV27A0A0K0K1C4 114 aa17.27■□□□□ 0.36
TRIM28-204ENST00000594806 CKS2P33552 79 aa17.27■□□□□ 0.36
TRIM28-204ENST00000594806 GAGE6Q13070 117 aa17.27■□□□□ 0.36
TRIM28-204ENST00000594806 NRACQ8N912 160 aa17.27■□□□□ 0.36
TRIM28-204ENST00000594806 A0A1B0GUV1 79 aa17.26■□□□□ 0.35
TRIM28-204ENST00000594806 UBE2L6O14933 153 aa17.26■□□□□ 0.35
TRIM28-204ENST00000594806 EREGO14944 169 aa17.26■□□□□ 0.35
TRIM28-204ENST00000594806 PSCAO43653 123 aa17.26■□□□□ 0.35
TRIM28-204ENST00000594806 RHEBQ15382 184 aa17.26■□□□□ 0.35
TRIM28-204ENST00000594806 TRBV24-1A0A075B6N3 115 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 SMKR1H3BMG3 65 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 H7C423 109 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 VCYO14598 125 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 APCSP02743 223 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 SUMO2P61956 95 aaKnown RBP17.25■□□□□ 0.35
TRIM28-204ENST00000594806 RBX1P62877 108 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 C20orf78Q9BR46 151 aa17.25■□□□□ 0.35
TRIM28-204ENST00000594806 EPPK1P58107 5090 aaKnown RBP17.24■□□□□ 0.35
TRIM28-204ENST00000594806 C7orf77A4D0Y5 90 aa17.24■□□□□ 0.35
TRIM28-204ENST00000594806 ANGP03950 147 aaKnown RBP17.24■□□□□ 0.35
TRIM28-204ENST00000594806 NDUFA5Q16718 116 aa17.24■□□□□ 0.35
TRIM28-204ENST00000594806 CLRN3Q8NCR9 226 aa17.24■□□□□ 0.35
TRIM28-204ENST00000594806 PHOX2AO14813 284 aa17.23■□□□□ 0.35
TRIM28-204ENST00000594806 S100PP25815 95 aa17.23■□□□□ 0.35
TRIM28-204ENST00000594806 UBE2WQ96B02 151 aa17.23■□□□□ 0.35
TRIM28-204ENST00000594806 CRPP02741 224 aa17.22■□□□□ 0.35
TRIM28-204ENST00000594806 RPL32P62910 135 aaKnown RBP17.22■□□□□ 0.35
TRIM28-204ENST00000594806 Q8N976 141 aa17.22■□□□□ 0.35
TRIM28-204ENST00000594806 D6R8Y8 96 aa17.21■□□□□ 0.35
TRIM28-204ENST00000594806 ORMDL3Q8N138 153 aa17.21■□□□□ 0.35
TRIM28-204ENST00000594806 DEFB104AQ8WTQ1 72 aa17.21■□□□□ 0.35
TRIM28-204ENST00000594806 TNFRSF6BO95407 300 aa17.2■□□□□ 0.34
TRIM28-204ENST00000594806 KIR2DL4Q99706 377 aa17.2■□□□□ 0.34
TRIM28-204ENST00000594806 PRR34Q9NV39 138 aa17.2■□□□□ 0.34
TRIM28-204ENST00000594806 HECTD4Q9Y4D8 3996 aa17.2■□□□□ 0.34
TRIM28-204ENST00000594806 A0A087WTM6 91 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 TCAPO15273 167 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 TSHBP01222 138 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 MIAQ16674 131 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 SVBPQ8N300 66 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 RPS10P5Q9NQ39 176 aa17.19■□□□□ 0.34
TRIM28-204ENST00000594806 ESDP10768 282 aa17.18■□□□□ 0.34
TRIM28-204ENST00000594806 ENHOQ6UWT2 76 aa17.18■□□□□ 0.34
TRIM28-204ENST00000594806 TMEM136Q6ZRR5 245 aa17.18■□□□□ 0.34
TRIM28-204ENST00000594806 LAMTOR2Q9Y2Q5 125 aa17.18■□□□□ 0.34
TRIM28-204ENST00000594806 SNAPINO95295 136 aa17.17■□□□□ 0.34
TRIM28-204ENST00000594806 APOC3P02656 99 aa17.17■□□□□ 0.34
TRIM28-204ENST00000594806 C20orf203Q8NBC4 194 aa17.17■□□□□ 0.34
TRIM28-204ENST00000594806 IGKV2D-24A0A075B6R9 120 aa17.16■□□□□ 0.34
TRIM28-204ENST00000594806 ZNF25P17030 456 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-204ENST00000594806 FCER1GP30273 86 aa17.16■□□□□ 0.34
TRIM28-204ENST00000594806 AMMECR1LQ6DCA0 310 aa17.16■□□□□ 0.34
TRIM28-204ENST00000594806 LINC00269Q8N2A0 174 aa17.16■□□□□ 0.34
TRIM28-204ENST00000594806 C1orf43Q9BWL3 253 aa17.16■□□□□ 0.34
TRIM28-204ENST00000594806 COX19Q49B96 90 aa17.15■□□□□ 0.34
TRIM28-204ENST00000594806 SPATA12Q7Z6I5 190 aa17.15■□□□□ 0.34
TRIM28-204ENST00000594806 PRELID3AQ96N28 172 aa17.15■□□□□ 0.34
TRIM28-204ENST00000594806 PKD1P98161 4303 aa17.14■□□□□ 0.33
TRIM28-204ENST00000594806 LRCOL1A6NCL2 159 aa17.14■□□□□ 0.33
TRIM28-204ENST00000594806 NPYP01303 97 aa17.14■□□□□ 0.33
TRIM28-204ENST00000594806 PGPEP1Q9NXJ5 209 aa17.14■□□□□ 0.33
TRIM28-204ENST00000594806 IGLV4-60A0A075B6I1 120 aa17.13■□□□□ 0.33
TRIM28-204ENST00000594806 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-204ENST00000594806 IGKV2-29A2NJV5 120 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-204ENST00000594806 REG3AQ06141 175 aa17.13■□□□□ 0.33
TRIM28-204ENST00000594806 SMAGPQ0VAQ4 97 aa17.13■□□□□ 0.33
TRIM28-204ENST00000594806 SMIM2Q9BVW6 85 aa17.13■□□□□ 0.33
TRIM28-204ENST00000594806 TRAV8-4A0A0B4J246 113 aa17.12■□□□□ 0.33
TRIM28-204ENST00000594806 FGF6P10767 208 aa17.12■□□□□ 0.33
TRIM28-204ENST00000594806 CDPF1Q6NVV7 123 aa17.12■□□□□ 0.33
TRIM28-204ENST00000594806 PRSS47A8MTI9 375 aa17.11■□□□□ 0.33
TRIM28-204ENST00000594806 HLA-DQA1P01909 254 aa17.11■□□□□ 0.33
TRIM28-204ENST00000594806 RNASEKQ6P5S7 137 aaKnown RBP17.11■□□□□ 0.33
TRIM28-204ENST00000594806 MRPL52Q86TS9 123 aaKnown RBP17.1■□□□□ 0.33
TRIM28-204ENST00000594806 TMEM18Q96B42 140 aa17.1■□□□□ 0.33
TRIM28-204ENST00000594806 TMEM101Q96IK0 257 aa17.1■□□□□ 0.33
TRIM28-204ENST00000594806 GNB1LQ9BYB4 327 aa17.1■□□□□ 0.33
TRIM28-204ENST00000594806 C16orf90A8MZG2 172 aa17.09■□□□□ 0.33
TRIM28-204ENST00000594806 BIRC6Q9NR09 4857 aa17.08■□□□□ 0.33
TRIM28-204ENST00000594806 KRTAP10-2P60368 255 aa17.08■□□□□ 0.32
TRIM28-204ENST00000594806 MAPKAPK5-AS1Q8N8E1 139 aa17.08■□□□□ 0.32
TRIM28-204ENST00000594806 CLPSL2Q6UWE3 100 aa17.07■□□□□ 0.32
TRIM28-204ENST00000594806 NTN5Q8WTR8 489 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-204ENST00000594806 MAP1LC3AQ9H492 121 aa17.07■□□□□ 0.32
TRIM28-204ENST00000594806 CSDC2Q9Y534 153 aaKnown RBP17.07■□□□□ 0.32
TRIM28-204ENST00000594806 MT-ND6P03923 174 aa17.06■□□□□ 0.32
TRIM28-204ENST00000594806 Q8N814 137 aa17.06■□□□□ 0.32
TRIM28-204ENST00000594806 OR5A1Q8NGJ0 315 aa17.06■□□□□ 0.32
TRIM28-204ENST00000594806 RAB5AP20339 215 aa17.05■□□□□ 0.32
TRIM28-204ENST00000594806 DNAH11Q96DT5 4516 aa17.04■□□□□ 0.32
TRIM28-204ENST00000594806 BAALCQ8WXS3 180 aa17.04■□□□□ 0.32
TRIM28-204ENST00000594806 TIMM21Q9BVV7 248 aa17.04■□□□□ 0.32
TRIM28-204ENST00000594806 PKHD1P08F94 4074 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms