RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	GAS8-AS1	O95177	125 aa		10.78	□□□□□ -0.68
ERBB2-222	ENST00000584908	ANG	P03950	147 aa	Known RBP	10.78	□□□□□ -0.68
ERBB2-222	ENST00000584908	GAGE6	Q13070	117 aa		10.78	□□□□□ -0.68
ERBB2-222	ENST00000584908	MAPKAPK5-AS1	Q8N8E1	139 aa		10.78	□□□□□ -0.68
ERBB2-222	ENST00000584908	RYR1	P21817	5038 aa		10.78	□□□□□ -0.68
ERBB2-222	ENST00000584908		A0A1B0GXF2	115 aa		10.77	□□□□□ -0.69
ERBB2-222	ENST00000584908	CDK2AP2	O75956	126 aa		10.77	□□□□□ -0.69
ERBB2-222	ENST00000584908	FAM104B	Q5XKR9	115 aa		10.77	□□□□□ -0.69
ERBB2-222	ENST00000584908	RPS10	P46783	165 aa	Known RBP	10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	AMT	P48728	403 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	POLR2K	P53803	58 aa	Known RBP	10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	MIA	Q16674	131 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908		Q8N814	137 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	NTN5	Q8WTR8	489 aa	Predicted RBP	10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	ANAPC16	Q96DE5	110 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	TMEM70	Q9BUB7	260 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	ST20	Q9HBF5	79 aa		10.76	□□□□□ -0.69
ERBB2-222	ENST00000584908	IGKV2D-24	A0A075B6R9	120 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	TRBV27	A0A0K0K1C4	114 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908		I3L3M4	83 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	PPP1R17	O96001	155 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	CRP	P02741	224 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	HBB	P68871	147 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	C20orf203	Q8NBC4	194 aa		10.75	□□□□□ -0.69
ERBB2-222	ENST00000584908	TMEM218	A2RU14	115 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	LINC00862	A6NCI5	91 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908		H7C423	109 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	MT-ND4L	P03901	98 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	S100A8	P05109	93 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	ADCYAP1	P18509	176 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	CAMP	P49913	170 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	WFDC2	Q14508	124 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	MRPL51	Q4U2R6	128 aa	Known RBP	10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	ATP5L2	Q7Z4Y8	100 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	LINC00269	Q8N2A0	174 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	NRAC	Q8N912	160 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	DEFB104A	Q8WTQ1	72 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	C1orf43	Q9BWL3	253 aa		10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	APOB	P04114	4563 aa	Known RBP	10.74	□□□□□ -0.69
ERBB2-222	ENST00000584908	MRPL54	Q6P161	138 aa	Known RBP	10.73	□□□□□ -0.69
ERBB2-222	ENST00000584908	IGLV4-60	A0A075B6I1	120 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	SMKR1	H3BMG3	65 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	UBE2L6	O14933	153 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	TSHB	P01222	138 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	APCS	P02743	223 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	ESD	P10768	282 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	PMCH	P20382	165 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	FUS	P35637	526 aa	Known RBP eCLIP	10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	HSPG2	P98160	4391 aa		10.72	□□□□□ -0.69
ERBB2-222	ENST00000584908	TRBV24-1	A0A075B6N3	115 aa		10.71	□□□□□ -0.69
ERBB2-222	ENST00000584908		F8W036	122 aa		10.71	□□□□□ -0.69
ERBB2-222	ENST00000584908	REG3A	Q06141	175 aa		10.71	□□□□□ -0.69
ERBB2-222	ENST00000584908	KRTAP26-1	Q6PEX3	210 aa		10.71	□□□□□ -0.69
ERBB2-222	ENST00000584908	BAALC	Q8WXS3	180 aa		10.71	□□□□□ -0.69
ERBB2-222	ENST00000584908	TRAV8-4	A0A0B4J246	113 aa		10.7	□□□□□ -0.7
ERBB2-222	ENST00000584908	SUMO2	P61956	95 aa	Known RBP	10.7	□□□□□ -0.7
ERBB2-222	ENST00000584908	RPL32	P62910	135 aa	Known RBP	10.7	□□□□□ -0.7
ERBB2-222	ENST00000584908	SEC11C	Q9BY50	192 aa		10.7	□□□□□ -0.7
ERBB2-222	ENST00000584908	IGLV5-52	A0A0A0MRZ9	124 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	VCY	O14598	125 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	GCSH	P23434	173 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	COMMD7	Q86VX2	200 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	C20orf78	Q9BR46	151 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	TMEM242	Q9NWH2	141 aa		10.69	□□□□□ -0.7
ERBB2-222	ENST00000584908	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	IGKV2-29	A2NJV5	120 aa	Predicted RBP	10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	LECT2	O14960	151 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	PPBP	P02775	128 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	ZNF25	P17030	456 aa	Predicted RBP	10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	CKS2	P33552	79 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	KRTAP10-1	P60331	282 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	CLPSL2	Q6UWE3	100 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	IMMP2L	Q96T52	175 aa		10.68	□□□□□ -0.7
ERBB2-222	ENST00000584908	PHOX2A	O14813	284 aa		10.67	□□□□□ -0.7
ERBB2-222	ENST00000584908	FGF6	P10767	208 aa		10.67	□□□□□ -0.7
ERBB2-222	ENST00000584908		D6R8Y8	96 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	TNFRSF6B	O95407	300 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	C10orf91	Q5T1B1	145 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	AMMECR1L	Q6DCA0	310 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	MRPL52	Q86TS9	123 aa	Known RBP	10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	BTF3L4	Q96K17	158 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	CTDSP1	Q9GZU7	261 aa		10.66	□□□□□ -0.7
ERBB2-222	ENST00000584908	C7orf77	A4D0Y5	90 aa		10.65	□□□□□ -0.7
ERBB2-222	ENST00000584908	C14orf177	Q52M58	125 aa		10.65	□□□□□ -0.7
ERBB2-222	ENST00000584908	KIR2DL4	Q99706	377 aa		10.65	□□□□□ -0.7
ERBB2-222	ENST00000584908	HLA-DQA1	P01909	254 aa		10.64	□□□□□ -0.71
ERBB2-222	ENST00000584908	RNASEK	Q6P5S7	137 aa	Known RBP	10.64	□□□□□ -0.71
ERBB2-222	ENST00000584908	IGLV10-54	A0A075B6I4	117 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	USP17L23	D6RBM5	183 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	TCAP	O15273	167 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	NPY	P01303	97 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	ORMDL3	Q8N138	153 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	SMIM2	Q9BVW6	85 aa		10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.63	□□□□□ -0.71
ERBB2-222	ENST00000584908	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.62	□□□□□ -0.71
ERBB2-222	ENST00000584908	TRAV9-1	A0A075B6T8	112 aa		10.62	□□□□□ -0.71
ERBB2-222	ENST00000584908	FCER1G	P30273	86 aa		10.62	□□□□□ -0.71
ERBB2-222	ENST00000584908	XG	P55808	180 aa		10.62	□□□□□ -0.71
ERBB2-222	ENST00000584908	TMEM136	Q6ZRR5	245 aa		10.62	□□□□□ -0.71
ERBB2-222	ENST00000584908	KRTAP17-1	Q9BYP8	105 aa		10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms