RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 LINC00477Q96M19 166 aa2.69□□□□□ -1.98
SMCHD1-208ENST00000583344 NAA38Q9BRA0 125 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-208ENST00000583344 NHP2Q9NX24 153 aaKnown RBP2.69□□□□□ -1.98
SMCHD1-208ENST00000583344 TNCP24821 2201 aa2.69□□□□□ -1.98
SMCHD1-208ENST00000583344 SDK1Q7Z5N4 2213 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TRBV20-1A0A075B6N2 111 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 IGHV1OR15-1A0A075B7D0 117 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TRBV7-1A0A0A6YYK4 115 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 IGHV7-81A0A0B4J1V7 117 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 IGHV1-69DA0A0B4J2H0 117 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 A0A1B0GV72 72 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 NCBP2LA6PVI3 153 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 DUSP14O95147 198 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 BRI3O95415 125 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 LGALS1P09382 135 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 COX6B1P14854 86 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 COX7A1P24310 79 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 HLA-DMBP28068 263 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 DLX1P56177 255 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 ETDBQ3ZM63 59 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TMEM78Q5T7P6 136 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 CFAP126Q5VTH2 177 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 GPHB5Q86YW7 130 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 KIR2DL5BQ8NHK3 375 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 Q8TAT8 98 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 FAM19A4Q96LR4 140 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 SCGB3A1Q96QR1 104 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 SMIM2Q9BVW6 85 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TTTY13Q9BZ97 58 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 CYSLTR1Q9Y271 337 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TSSC4Q9Y5U2 329 aaPredicted RBP2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 ASPMQ8IZT6 3477 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 HELZ2Q9BYK8 2649 aaKnown RBP2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 HECTD1Q9ULT8 2610 aa2.68□□□□□ -1.98
SMCHD1-208ENST00000583344 TRAV21A0A0B4J279 112 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 OR11H12B2RN74 326 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 LYNX1G3V0Z9 82 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 K7EMT4 169 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 OVOL1O14753 267 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 TRGV3P03979 118 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 CRYGDP07320 174 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 CD7P09564 240 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 LYNX1P0DP58 116 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 CRYBA4P53673 196 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 POLR2KP53803 58 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 UBE2D3P61077 147 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 UBE2D2P62837 147 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 KLRD1Q13241 179 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 LYRM7Q5U5X0 104 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 SPANXN1Q5VSR9 72 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 VMO1Q7Z5L0 202 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 MRPL55Q7Z7F7 128 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 SLC25A29Q8N8R3 303 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 OR11H1Q8NG94 326 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 OR11H2Q8NH07 326 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 ITLN2Q8WWU7 325 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 TMEM141Q96I45 108 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 GTSF1LQ9H1H1 148 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 DPH3P1Q9H4G8 78 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 NAV2Q8IVL1 2488 aa2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 INTS1Q8N201 2190 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-208ENST00000583344 A0A0J9YY99 117 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 TRBV6-5A0A0K0K1A5 114 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 IGIPA6NJ69 53 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 C11orf86A6NJI1 115 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 TMEM262E9PQX1 116 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 K7ERJ3 54 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 UBE2E1P51965 193 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 LINC00315P59091 139 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 CKS1BP61024 79 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 SMAGPQ0VAQ4 97 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 HES1Q14469 280 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 C5orf47Q569G3 176 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 NDUFA11Q86Y39 141 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 C6orf223Q8N319 242 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 ZFAND2AQ8N6M9 145 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 ZNF418Q8TF45 676 aaPredicted RBP2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 PPDPFLQ8WWR9 84 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 CARD19Q96LW7 228 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 METTL26Q96S19 204 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 TIMM17AQ99595 171 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 PRADC1Q9BSG0 188 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 PRORYQ9H606 182 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 SPANXA1Q9NS26 97 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 MRPL16Q9NX20 251 aaKnown RBP2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 S4R3C0 116 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 MYO18BQ8IUG5 2567 aa2.66□□□□□ -1.98
SMCHD1-208ENST00000583344 CNTRLQ7Z7A1 2325 aa2.65□□□□□ -1.98
SMCHD1-208ENST00000583344 A0A0J9YX75 114 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 FAM223BA6NKX1 122 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 NDUFA4O00483 81 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 APOMO95445 188 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-23P01764 117 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-30P01768 117 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-30-5P0DP03 117 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 ASIPP42127 132 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 INSL3P51460 131 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 EFNA4P52798 201 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 TCTAP57738 103 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms