RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ATP6V0E2Q8NHE4 81 aa10.67□□□□□ -0.7
SS18-215ENST00000580642 IGHV1-24A0A0C4DH33 117 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 NUPR1O60356 82 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 NUDT3O95989 172 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 AMTP48728 403 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 SMAGPQ0VAQ4 97 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 C15orf53Q8NAA6 179 aa10.66□□□□□ -0.7
SS18-215ENST00000580642 H7C423 109 aa10.65□□□□□ -0.7
SS18-215ENST00000580642 NPSP0C0P6 89 aa10.65□□□□□ -0.7
SS18-215ENST00000580642 NEGR1Q7Z3B1 354 aa10.65□□□□□ -0.7
SS18-215ENST00000580642 HSPB8Q9UJY1 196 aa10.65□□□□□ -0.7
SS18-215ENST00000580642 A0A0J9YY99 117 aa10.64□□□□□ -0.71
SS18-215ENST00000580642 LOC100131303A0A0U1RQF7 123 aa10.64□□□□□ -0.71
SS18-215ENST00000580642 C20orf203Q8NBC4 194 aa10.64□□□□□ -0.71
SS18-215ENST00000580642 HIST1H2BLQ99880 126 aa10.64□□□□□ -0.71
SS18-215ENST00000580642 CYSLTR1Q9Y271 337 aa10.64□□□□□ -0.71
SS18-215ENST00000580642 TRBV25-1A0A075B6N4 114 aa10.63□□□□□ -0.71
SS18-215ENST00000580642 A0A096LPF7 62 aa10.63□□□□□ -0.71
SS18-215ENST00000580642 TRBV6-8A0A0A6YYG3 113 aa10.63□□□□□ -0.71
SS18-215ENST00000580642 PDZD11Q5EBL8 140 aa10.63□□□□□ -0.71
SS18-215ENST00000580642 PHLDA1Q8WV24 401 aaPredicted RBP10.63□□□□□ -0.71
SS18-215ENST00000580642 TOMM6Q96B49 74 aa10.63□□□□□ -0.71
SS18-215ENST00000580642 PRKDCP78527 4128 aaKnown RBP10.62□□□□□ -0.71
SS18-215ENST00000580642 A0A096LNJ9 63 aa10.62□□□□□ -0.71
SS18-215ENST00000580642 ATP5LO75964 103 aa10.62□□□□□ -0.71
SS18-215ENST00000580642 LEPROTL1O95214 131 aa10.62□□□□□ -0.71
SS18-215ENST00000580642 TCTAP57738 103 aa10.62□□□□□ -0.71
SS18-215ENST00000580642 PKIAP61925 76 aa10.62□□□□□ -0.71
SS18-215ENST00000580642 IGHV3-38A0A0C4DH36 116 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 BTF3P20290 206 aaKnown RBP10.61□□□□□ -0.71
SS18-215ENST00000580642 C2orf66Q6UXQ4 117 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 ERASQ7Z444 233 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 FAM19A2Q8N3H0 131 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 CHCHD7Q9BUK0 85 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 TIMM21Q9BVV7 248 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 PYGO1Q9Y3Y4 419 aa10.61□□□□□ -0.71
SS18-215ENST00000580642 STAB2Q8WWQ8 2551 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 NUPR2A6NF83 97 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 IFITM10A6NMD0 228 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 FABP4P15090 132 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 PAPPA-AS1Q5QFB9 102 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 NTM-AS1Q6ZSK4 140 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 TMEM141Q96I45 108 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 TIMM17AQ99595 171 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 TMEM243Q9BU79 118 aa10.6□□□□□ -0.71
SS18-215ENST00000580642 CSDC2Q9Y534 153 aaKnown RBP10.6□□□□□ -0.71
SS18-215ENST00000580642 LELP1Q5T871 98 aa10.59□□□□□ -0.71
SS18-215ENST00000580642 CEMP1Q6PRD7 247 aaPredicted RBP10.59□□□□□ -0.71
SS18-215ENST00000580642 MRPL52Q86TS9 123 aaKnown RBP10.59□□□□□ -0.71
SS18-215ENST00000580642 SPANXA1Q9NS26 97 aa10.59□□□□□ -0.71
SS18-215ENST00000580642 KLK5Q9Y337 293 aaPredicted RBP10.59□□□□□ -0.71
SS18-215ENST00000580642 ZNF25P17030 456 aaPredicted RBP10.58□□□□□ -0.72
SS18-215ENST00000580642 PMCHL1Q16048 86 aa10.58□□□□□ -0.72
SS18-215ENST00000580642 FBN3Q75N90 2809 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 IGIPA6NJ69 53 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.57□□□□□ -0.72
SS18-215ENST00000580642 AKR1D1P51857 326 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 LYPD5Q6UWN5 251 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 SPATA12Q7Z6I5 190 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 SCGB3A1Q96QR1 104 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 MAP1LC3CQ9BXW4 147 aa10.57□□□□□ -0.72
SS18-215ENST00000580642 UBE2L6O14933 153 aa10.56□□□□□ -0.72
SS18-215ENST00000580642 IFI27L1Q96BM0 104 aa10.56□□□□□ -0.72
SS18-215ENST00000580642 COL7A1Q02388 2944 aa10.55□□□□□ -0.72
SS18-215ENST00000580642 MRPS36P82909 103 aaKnown RBP10.55□□□□□ -0.72
SS18-215ENST00000580642 UBE2D4Q9Y2X8 147 aa10.55□□□□□ -0.72
SS18-215ENST00000580642 TRAV8-6A0A0B4J262 113 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 A0A1B0GUV1 79 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 LOC105371267A0A1B0GV96 52 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 IGLL5B9A064 214 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 PET117Q6UWS5 81 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 OR10D4PQ8NGN7 298 aa10.54□□□□□ -0.72
SS18-215ENST00000580642 TRAV12-1A0A0B4J245 112 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 FGF6P10767 208 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 RPL39P62891 51 aaKnown RBP10.53□□□□□ -0.72
SS18-215ENST00000580642 DGAT2L7PQ6IED9 249 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 Q6ZN92 141 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 TMEM101Q96IK0 257 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 CHCHD5Q9BSY4 110 aa10.53□□□□□ -0.72
SS18-215ENST00000580642 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.52□□□□□ -0.73
SS18-215ENST00000580642 IGKV2-29A2NJV5 120 aaPredicted RBP10.52□□□□□ -0.73
SS18-215ENST00000580642 SYS1-DBNDD2H3BUS1 97 aa10.52□□□□□ -0.73
SS18-215ENST00000580642 CCL18P55774 89 aa10.52□□□□□ -0.73
SS18-215ENST00000580642 AMMECR1LQ6DCA0 310 aa10.52□□□□□ -0.73
SS18-215ENST00000580642 WWC2-AS2Q96NR7 200 aa10.52□□□□□ -0.73
SS18-215ENST00000580642 C20orf202A1L168 122 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 PRSS1P07477 247 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 C3orf79P0CE67 100 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 ESRGQ1W209 222 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 OR5A1Q8NGJ0 315 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 DEFB104AQ8WTQ1 72 aa10.51□□□□□ -0.73
SS18-215ENST00000580642 IGLV4-3A0A075B6K6 122 aa10.5□□□□□ -0.73
SS18-215ENST00000580642 KRTDAPP60985 99 aa10.5□□□□□ -0.73
SS18-215ENST00000580642 PMVKQ15126 192 aa10.5□□□□□ -0.73
SS18-215ENST00000580642 VCX2Q9H322 139 aa10.5□□□□□ -0.73
SS18-215ENST00000580642 MRPS16Q9Y3D3 137 aaKnown RBP10.5□□□□□ -0.73
SS18-215ENST00000580642 JOSD1Q15040 202 aaPredicted RBP10.49□□□□□ -0.73
SS18-215ENST00000580642 LGALS9CQ6DKI2 356 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 LINC00173Q6ZV60 143 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 MUC7Q8TAX7 377 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms