RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 LRRK2Q5S007 2527 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 IGHV3-38A0A0C4DH36 116 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 TIMM21Q9BVV7 248 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 MXRA5Q9NR99 2828 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 ABCA12Q86UK0 2595 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 TRGV11A0A075B6L2 103 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 IGHV3-30-3P0DP02 117 aa12.56□□□□□ -0.4
VPS53-215ENST00000573028 KHDC1LQ5JSQ8 128 aa12.55□□□□□ -0.4
VPS53-215ENST00000573028 A0A0J9YXY3 114 aa12.55□□□□□ -0.4
VPS53-215ENST00000573028 ELANEP08246 267 aa12.55□□□□□ -0.4
VPS53-215ENST00000573028 C18orf65Q6ZTR6 163 aa12.55□□□□□ -0.4
VPS53-215ENST00000573028 ODF3Q96PU9 254 aa12.55□□□□□ -0.4
VPS53-215ENST00000573028 Q6ZUT4 128 aa12.54□□□□□ -0.4
VPS53-215ENST00000573028 PIEZO1Q92508 2521 aa12.54□□□□□ -0.4
VPS53-215ENST00000573028 SLURP1P55000 103 aa12.54□□□□□ -0.4
VPS53-215ENST00000573028 TMEM263Q8WUH6 116 aaKnown RBP12.54□□□□□ -0.4
VPS53-215ENST00000573028 SONP18583 2426 aaKnown RBP12.54□□□□□ -0.4
VPS53-215ENST00000573028 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.54□□□□□ -0.4
VPS53-215ENST00000573028 IGKV2-29A2NJV5 120 aaPredicted RBP12.54□□□□□ -0.4
VPS53-215ENST00000573028 Q5PR19 223 aa12.53□□□□□ -0.4
VPS53-215ENST00000573028 PRORYQ9H606 182 aa12.53□□□□□ -0.4
VPS53-215ENST00000573028 CRYBA4P53673 196 aa12.52□□□□□ -0.4
VPS53-215ENST00000573028 Q6ZSN1 163 aa12.52□□□□□ -0.41
VPS53-215ENST00000573028 Q6ZSV7 163 aa12.52□□□□□ -0.41
VPS53-215ENST00000573028 NAV2Q8IVL1 2488 aa12.52□□□□□ -0.41
VPS53-215ENST00000573028 GEMIN7Q9H840 131 aaKnown RBP12.51□□□□□ -0.41
VPS53-215ENST00000573028 IGSF10Q6WRI0 2623 aa12.51□□□□□ -0.41
VPS53-215ENST00000573028 NDUFA12Q9UI09 145 aa12.51□□□□□ -0.41
VPS53-215ENST00000573028 NTN5Q8WTR8 489 aaPredicted RBP12.5□□□□□ -0.41
VPS53-215ENST00000573028 DAND5Q8N907 189 aa12.5□□□□□ -0.41
VPS53-215ENST00000573028 ADAMTSL4-AS1Q5T5F5 129 aa12.5□□□□□ -0.41
VPS53-215ENST00000573028 EPG5Q9HCE0 2579 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 IGHV3OR16-12A0A075B7B8 117 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.49□□□□□ -0.41
VPS53-215ENST00000573028 M0R2P5 195 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 A0A0U1RRA0 63 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 LINC01356Q8N9X3 169 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 LINC01587Q99440 93 aa12.49□□□□□ -0.41
VPS53-215ENST00000573028 A0A0B4J2C4 111 aa12.48□□□□□ -0.41
VPS53-215ENST00000573028 TEX15Q9BXT5 2789 aa12.48□□□□□ -0.41
VPS53-215ENST00000573028 RBMY1BA6NDE4 496 aaKnown RBP12.47□□□□□ -0.41
VPS53-215ENST00000573028 RBMY1EA6NEQ0 496 aaKnown RBP12.47□□□□□ -0.41
VPS53-215ENST00000573028 TRIAP1O43715 76 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 RBMY1DP0C7P1 496 aaKnown RBP12.47□□□□□ -0.41
VPS53-215ENST00000573028 FAM104AQ969W3 186 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 SBSPONQ8IVN8 264 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 TMEM61Q8N0U2 210 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 TRAV26-1A0A087WT03 109 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 LINC01620Q4KN68 170 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 VPREB3Q9UKI3 123 aa12.47□□□□□ -0.41
VPS53-215ENST00000573028 H3BMM0 161 aa12.46□□□□□ -0.41
VPS53-215ENST00000573028 ATXN8Q156A1 80 aa12.46□□□□□ -0.41
VPS53-215ENST00000573028 LINC00467Q9BRT7 94 aa12.46□□□□□ -0.41
VPS53-215ENST00000573028 CHD6Q8TD26 2715 aa12.46□□□□□ -0.42
VPS53-215ENST00000573028 MRPS36P82909 103 aaKnown RBP12.46□□□□□ -0.42
VPS53-215ENST00000573028 DGAT2L7PQ6IED9 249 aa12.46□□□□□ -0.42
VPS53-215ENST00000573028 ZNF625Q96I27 306 aaPredicted RBP12.46□□□□□ -0.42
VPS53-215ENST00000573028 IGHV1-58A0A0C4DH39 117 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 TEX49A0A1B0GTD5 131 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 JMJD1CQ15652 2540 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 GATA3P23771 443 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 UBE2E2Q96LR5 201 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 ZNF702PQ9H963 129 aa12.45□□□□□ -0.42
VPS53-215ENST00000573028 FBN2P35556 2912 aa12.44□□□□□ -0.42
VPS53-215ENST00000573028 CCDC168Q8NDH2 2452 aa12.44□□□□□ -0.42
VPS53-215ENST00000573028 ZNF415Q09FC8 603 aa12.44□□□□□ -0.42
VPS53-215ENST00000573028 LITAFQ99732 161 aa12.44□□□□□ -0.42
VPS53-215ENST00000573028 PYGO1Q9Y3Y4 419 aa12.44□□□□□ -0.42
VPS53-215ENST00000573028 DYNLRB2Q8TF09 96 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 CLEC2BQ92478 149 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 ZNF462Q96JM2 2506 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 VSIG2Q96IQ7 327 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 CHCHD7Q9BUK0 85 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 XCL2Q9UBD3 114 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 UBE2D4Q9Y2X8 147 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 CLUHP3Q96NS8 147 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 CDKN2A-AS1Q9UH64 79 aa12.43□□□□□ -0.42
VPS53-215ENST00000573028 C11orf44Q8N8P7 122 aa12.42□□□□□ -0.42
VPS53-215ENST00000573028 TMEM89A2RUT3 159 aa12.42□□□□□ -0.42
VPS53-215ENST00000573028 ICOSQ9Y6W8 199 aa12.42□□□□□ -0.42
VPS53-215ENST00000573028 TMEM262E9PQX1 116 aa12.41□□□□□ -0.42
VPS53-215ENST00000573028 C2orf82Q6UX34 121 aa12.41□□□□□ -0.42
VPS53-215ENST00000573028 IGHV3-53P01767 116 aa12.41□□□□□ -0.42
VPS53-215ENST00000573028 RNF183Q96D59 192 aa12.41□□□□□ -0.42
VPS53-215ENST00000573028 TEX29Q8N6K0 151 aa12.4□□□□□ -0.42
VPS53-215ENST00000573028 ZFAND6Q6FIF0 208 aa12.4□□□□□ -0.42
VPS53-215ENST00000573028 MIAQ16674 131 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 ANAPC13Q9BS18 74 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 TINCRA0A1B0GVN0 87 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 COX6CP09669 75 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 MAP6D1Q9H9H5 199 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 SPANXA1Q9NS26 97 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 NDUFA7O95182 113 aa12.39□□□□□ -0.43
VPS53-215ENST00000573028 RPL13AP40429 203 aaKnown RBP12.39□□□□□ -0.43
VPS53-215ENST00000573028 NF1P21359 2839 aa12.38□□□□□ -0.43
VPS53-215ENST00000573028 TRBV30A0A0K0K1B3 111 aa12.38□□□□□ -0.43
VPS53-215ENST00000573028 DSCR9P59020 149 aa12.38□□□□□ -0.43
VPS53-215ENST00000573028 SNCGO76070 127 aa12.38□□□□□ -0.43
VPS53-215ENST00000573028 TRBV10-2A0A0K0K1G8 114 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 Q6YL49 198 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 169.6 ms