RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IGKV2-40A0A087WW87 121 aaPredicted RBP8.12□□□□□ -1.11
CLK3-226ENST00000569406 NDUFC2-KCTD14E9PQ53 114 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 I3L3M4 83 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 M0R1W7 72 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 IGKV2D-40P01614 121 aaPredicted RBP8.12□□□□□ -1.11
CLK3-226ENST00000569406 STHQ8IWL8 128 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 IGHG2P01859 326 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 DCANP1Q8TF63 244 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 CACNA1AO00555 2505 aa8.12□□□□□ -1.11
CLK3-226ENST00000569406 NDPQ00604 133 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 ADARB2-AS1A8MUL3 147 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 IGLV1-47P01700 117 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 PTPN13Q12923 2485 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 PIEZO1Q92508 2521 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 IGHV1-8P0DP01 117 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 CD164Q04900 197 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 TMEM167AQ8TBQ9 72 aa8.11□□□□□ -1.11
CLK3-226ENST00000569406 PRRC2AP48634 2157 aaKnown RBP8.11□□□□□ -1.11
CLK3-226ENST00000569406 TRAV23DV6A0A075B6W5 121 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 SOSTDC1Q6X4U4 206 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 DNAL4O96015 105 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 XCL1P47992 114 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 SMIM2Q9BVW6 85 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 XCL2Q9UBD3 114 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 TOMM6Q96B49 74 aa8.1□□□□□ -1.11
CLK3-226ENST00000569406 WNK1Q9H4A3 2382 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 LY6HO94772 140 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 ZNF80P51504 273 aaPredicted RBP8.09□□□□□ -1.11
CLK3-226ENST00000569406 FANCD2OSQ96PS1 177 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 SETD2Q9BYW2 2564 aaPredicted RBP8.09□□□□□ -1.11
CLK3-226ENST00000569406 HOXB4P17483 251 aaPredicted RBP8.09□□□□□ -1.11
CLK3-226ENST00000569406 S100A4P26447 101 aaKnown RBP8.09□□□□□ -1.11
CLK3-226ENST00000569406 ECSCRQ19T08 205 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 FBXL19-AS1Q494R0 122 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 MRPL55Q7Z7F7 128 aaKnown RBP8.09□□□□□ -1.11
CLK3-226ENST00000569406 APRG1Q8IVJ8 170 aa8.09□□□□□ -1.11
CLK3-226ENST00000569406 LINC01560Q8TB33 94 aa8.09□□□□□ -1.12
CLK3-226ENST00000569406 MOB4Q9Y3A3 225 aa8.09□□□□□ -1.12
CLK3-226ENST00000569406 UTP20O75691 2785 aaKnown RBP8.08□□□□□ -1.12
CLK3-226ENST00000569406 BAALC-AS2P0C853 105 aa8.08□□□□□ -1.12
CLK3-226ENST00000569406 HILS1P60008 231 aa8.08□□□□□ -1.12
CLK3-226ENST00000569406 PAX4O43316 350 aa8.08□□□□□ -1.12
CLK3-226ENST00000569406 MYO9AB2RTY4 2548 aa8.08□□□□□ -1.12
CLK3-226ENST00000569406 ADORA2A-AS1P86434 159 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 PAPPA-AS1Q5QFB9 102 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 ADAMTSL4-AS1Q5T5F5 129 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 SPANXN1Q5VSR9 72 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 THAP8Q8NA92 274 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 TRBV7-6A0A0J9YX20 115 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 TRBV6-1A0A0K0K1D8 114 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 HIVEP3Q5T1R4 2406 aa8.07□□□□□ -1.12
CLK3-226ENST00000569406 A0A1W2PPR1 153 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 NXPH4O95158 308 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 IGLV4-69A0A075B6H9 119 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 TEX22C9J3V5 150 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 INAFM2P0DMQ5 153 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 WFDC9Q8NEX5 89 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 SNURFQ9Y675 71 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 CCKP06307 115 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 MGPP08493 103 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 LYPD5Q6UWN5 251 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 AMELXQ99217 191 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 BPESC1Q9GZL8 116 aa8.06□□□□□ -1.12
CLK3-226ENST00000569406 EPM2AB3EWF7 344 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 H7BZZ5 65 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 SUMO2P61956 95 aaKnown RBP8.05□□□□□ -1.12
CLK3-226ENST00000569406 LY6G5BQ8NDX9 201 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 FAM208BQ5VWN6 2430 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 SAA4P35542 130 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 DAND5Q8N907 189 aa8.05□□□□□ -1.12
CLK3-226ENST00000569406 BUB1B-PAK6H3BSN5 160 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 C11orf71Q6IPW1 123 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 COPS9Q8WXC6 57 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 FLNCQ14315 2725 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 IGHV3OR16-10A0A075B7F0 116 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 M0R381 172 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 RPL39LQ96EH5 51 aaKnown RBP8.04□□□□□ -1.12
CLK3-226ENST00000569406 IGHV1-3A0A0C4DH29 117 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 TMEM190Q8WZ59 177 aa8.04□□□□□ -1.12
CLK3-226ENST00000569406 ACACBO00763 2458 aa8.03□□□□□ -1.12
CLK3-226ENST00000569406 TLN2Q9Y4G6 2542 aa8.03□□□□□ -1.12
CLK3-226ENST00000569406 F5H697 171 aa8.03□□□□□ -1.12
CLK3-226ENST00000569406 F8WEM9 126 aa8.02□□□□□ -1.12
CLK3-226ENST00000569406 LINC00846Q9NV44 126 aa8.02□□□□□ -1.12
CLK3-226ENST00000569406 A0A0J9YXY3 114 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 BUB3O43684 328 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 Q6JHZ5 121 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 C14orf132Q9NPU4 83 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 TMEM14CQ9P0S9 112 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 ZNF580Q9UK33 172 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 SONP18583 2426 aaKnown RBP8.02□□□□□ -1.13
CLK3-226ENST00000569406 ZFYVE26Q68DK2 2539 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 C11orf45Q8TAV5 145 aa8.02□□□□□ -1.13
CLK3-226ENST00000569406 UBE2D4Q9Y2X8 147 aa8.01□□□□□ -1.13
CLK3-226ENST00000569406 ZNF469Q96JG9 3925 aaPredicted RBP8.01□□□□□ -1.13
CLK3-226ENST00000569406 RPL39P62891 51 aaKnown RBP8.01□□□□□ -1.13
CLK3-226ENST00000569406 ZNF491Q8N8L2 437 aa8.01□□□□□ -1.13
CLK3-226ENST00000569406 RMI2Q96E14 147 aa8.01□□□□□ -1.13
CLK3-226ENST00000569406 USP9YO00507 2555 aaPredicted RBP8.01□□□□□ -1.13
CLK3-226ENST00000569406 FBN2P35556 2912 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms