RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 RPL35P42766 123 aaKnown RBP11.01□□□□□ -0.65
CLK3-221ENST00000568139 KRTAP10-8P60410 259 aa11.01□□□□□ -0.65
CLK3-221ENST00000568139 STPG4Q8N801 248 aa11.01□□□□□ -0.65
CLK3-221ENST00000568139 TPPP3Q9BW30 176 aa11.01□□□□□ -0.65
CLK3-221ENST00000568139 IGKV2-24A0A0C4DH68 120 aa11□□□□□ -0.65
CLK3-221ENST00000568139 UMAD1C9J7I0 102 aa11□□□□□ -0.65
CLK3-221ENST00000568139 RPS20P60866 119 aaKnown RBP11□□□□□ -0.65
CLK3-221ENST00000568139 HIGD2BQ4VC39 106 aa11□□□□□ -0.65
CLK3-221ENST00000568139 KCNRGQ8N5I3 272 aa11□□□□□ -0.65
CLK3-221ENST00000568139 AMTP48728 403 aa10.99□□□□□ -0.65
CLK3-221ENST00000568139 COTL1Q14019 142 aa10.99□□□□□ -0.65
CLK3-221ENST00000568139 OR2D3Q8NGH3 330 aa10.99□□□□□ -0.65
CLK3-221ENST00000568139 C19orf71A6NCJ1 209 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 F2Z2F3 143 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 TRGC1P0CF51 173 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 SPINK6Q6UWN8 80 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 LYPD6BQ8NI32 183 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 C11orf52Q96A22 123 aa10.98□□□□□ -0.65
CLK3-221ENST00000568139 GVQW2A0A096LPI5 108 aaPredicted RBP10.97□□□□□ -0.65
CLK3-221ENST00000568139 A0A096LNI7 61 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 IGKV3OR2-268A0A0C4DH90 116 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 H2AFB1P0C5Y9 115 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 NTF3P20783 257 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 CENPWQ5EE01 88 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 REG3GQ6UW15 175 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 LYZL1Q6UWQ5 148 aa10.96□□□□□ -0.65
CLK3-221ENST00000568139 CHCHD10Q8WYQ3 142 aaPredicted RBP10.96□□□□□ -0.65
CLK3-221ENST00000568139 XKRY2A2RUG3 117 aa10.95□□□□□ -0.66
CLK3-221ENST00000568139 SRSF9Q13242 221 aaKnown RBP eCLIP10.95□□□□□ -0.66
CLK3-221ENST00000568139 ZNF345Q14585 488 aa10.95□□□□□ -0.66
CLK3-221ENST00000568139 SMIM12Q96EX1 92 aa10.94□□□□□ -0.66
CLK3-221ENST00000568139 LINC00474Q9P2X8 69 aa10.94□□□□□ -0.66
CLK3-221ENST00000568139 FOXI1Q12951 378 aa10.93□□□□□ -0.66
CLK3-221ENST00000568139 C9orf62Q8N4C0 152 aa10.93□□□□□ -0.66
CLK3-221ENST00000568139 MANBALQ9NQG1 85 aa10.93□□□□□ -0.66
CLK3-221ENST00000568139 SMLR1H3BR10 107 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 H7C423 109 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 IFNA1P01562 189 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 CCL20P78556 96 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 AMMECR1LQ6DCA0 310 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 GATD1Q8NB37 220 aa10.92□□□□□ -0.66
CLK3-221ENST00000568139 RAB19A4D1S5 217 aa10.91□□□□□ -0.66
CLK3-221ENST00000568139 NCR2O95944 276 aa10.91□□□□□ -0.66
CLK3-221ENST00000568139 Q6ZNX1 250 aa10.91□□□□□ -0.66
CLK3-221ENST00000568139 GNG13Q9P2W3 67 aa10.91□□□□□ -0.66
CLK3-221ENST00000568139 CTRLP40313 264 aa10.9□□□□□ -0.66
CLK3-221ENST00000568139 GNG4P50150 75 aa10.9□□□□□ -0.66
CLK3-221ENST00000568139 RNASEKQ6P5S7 137 aaKnown RBP10.9□□□□□ -0.66
CLK3-221ENST00000568139 Q6ZRP5 223 aa10.9□□□□□ -0.66
CLK3-221ENST00000568139 CNFNQ9BYD5 112 aa10.9□□□□□ -0.66
CLK3-221ENST00000568139 PKIGQ9Y2B9 76 aa10.9□□□□□ -0.66
CLK3-221ENST00000568139 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.89□□□□□ -0.67
CLK3-221ENST00000568139 TRAV1-1A0A0B4J248 108 aa10.89□□□□□ -0.67
CLK3-221ENST00000568139 TRAV26-2A0A0B4J265 109 aa10.89□□□□□ -0.67
CLK3-221ENST00000568139 IGKV2-29A2NJV5 120 aaPredicted RBP10.89□□□□□ -0.67
CLK3-221ENST00000568139 FGF6P10767 208 aa10.89□□□□□ -0.67
CLK3-221ENST00000568139 HMSDA8MTL9 139 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 BCL2L11O43521 198 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 GAS8-AS1O95177 125 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 TWIST1Q15672 202 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 OR5A1Q8NGJ0 315 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 BIN3Q9NQY0 253 aa10.88□□□□□ -0.67
CLK3-221ENST00000568139 TRBV20OR9-2A0A075B6H5 130 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 IGHV1-58A0A0C4DH39 117 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 KANTRA0A1W2PQU2 76 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 APCSP02743 223 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 ZNF25P17030 456 aaPredicted RBP10.87□□□□□ -0.67
CLK3-221ENST00000568139 NUDT10Q8NFP7 164 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 RPL39LQ96EH5 51 aaKnown RBP10.87□□□□□ -0.67
CLK3-221ENST00000568139 LINC00526Q96FQ7 95 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 NUDT11Q96G61 164 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 CARD19Q96LW7 228 aa10.87□□□□□ -0.67
CLK3-221ENST00000568139 XCL1P47992 114 aa10.86□□□□□ -0.67
CLK3-221ENST00000568139 EIF5AP63241 154 aaKnown RBP10.86□□□□□ -0.67
CLK3-221ENST00000568139 LINC00959A0A1B0GUT2 108 aa10.85□□□□□ -0.67
CLK3-221ENST00000568139 CCL25O15444 150 aa10.85□□□□□ -0.67
CLK3-221ENST00000568139 BATF3Q9NR55 127 aa10.85□□□□□ -0.67
CLK3-221ENST00000568139 FAM231BA6NCW3 169 aa10.84□□□□□ -0.67
CLK3-221ENST00000568139 SDHAF1A6NFY7 115 aa10.84□□□□□ -0.67
CLK3-221ENST00000568139 PDE6DO43924 150 aa10.84□□□□□ -0.67
CLK3-221ENST00000568139 MEF2BQ02080 365 aaPredicted RBP10.84□□□□□ -0.67
CLK3-221ENST00000568139 PTTG1IPP53801 180 aa10.83□□□□□ -0.68
CLK3-221ENST00000568139 SYCNQ0VAF6 134 aa10.83□□□□□ -0.68
CLK3-221ENST00000568139 TEX261Q6UWH6 196 aa10.83□□□□□ -0.68
CLK3-221ENST00000568139 BTF3L4Q96K17 158 aa10.83□□□□□ -0.68
CLK3-221ENST00000568139 MED9Q9NWA0 146 aa10.83□□□□□ -0.68
CLK3-221ENST00000568139 FOXA3P55318 350 aaPredicted RBP10.82□□□□□ -0.68
CLK3-221ENST00000568139 TMEM101Q96IK0 257 aa10.82□□□□□ -0.68
CLK3-221ENST00000568139 RPP21Q9H633 154 aaKnown RBP10.82□□□□□ -0.68
CLK3-221ENST00000568139 TEX46H3BTG2 121 aa10.81□□□□□ -0.68
CLK3-221ENST00000568139 I3L3M4 83 aa10.81□□□□□ -0.68
CLK3-221ENST00000568139 ZNF561-AS1K7EIQ3 104 aa10.81□□□□□ -0.68
CLK3-221ENST00000568139 ESDP10768 282 aa10.81□□□□□ -0.68
CLK3-221ENST00000568139 CD164L2Q6UWJ8 174 aa10.81□□□□□ -0.68
CLK3-221ENST00000568139 TRBV6-5A0A0K0K1A5 114 aa10.8□□□□□ -0.68
CLK3-221ENST00000568139 PMCHP20382 165 aa10.8□□□□□ -0.68
CLK3-221ENST00000568139 SS18Q15532 418 aa10.8□□□□□ -0.68
CLK3-221ENST00000568139 RGS21Q2M5E4 152 aa10.8□□□□□ -0.68
CLK3-221ENST00000568139 SMIM15Q7Z3B0 74 aa10.8□□□□□ -0.68
CLK3-221ENST00000568139 RNASE7Q9H1E1 156 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms