RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 C20orf78Q9BR46 151 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 DPH3P1Q9H4G8 78 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 SCRT2Q9NQ03 307 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 IGHV1OR15-1A0A075B7D0 117 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 TRAV25A0A0B4J276 109 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 H0Y8G0 127 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 ATP5LO75964 103 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 NXPH4O95158 308 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 CD7P09564 240 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 IGLL1P15814 213 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 CDKN1BP46527 198 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 CMC4P56277 68 aaPredicted RBP4.31□□□□□ -1.72
VPS39-209ENST00000568029 LAGE3Q14657 143 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 CASC10Q5T4H9 136 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 Q6ZQT7 251 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 KLHL30-AS1Q8NEE0 82 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 PMCHL2Q9BQD1 86 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 C16orf95Q9H693 158 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 MRPS16Q9Y3D3 137 aaKnown RBP4.31□□□□□ -1.72
VPS39-209ENST00000568029 GOLT1BQ9Y3E0 138 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 SELENOKQ9Y6D0 94 aa4.31□□□□□ -1.72
VPS39-209ENST00000568029 LINC01549A6NIU2 74 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 IGKV3-20P01619 116 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 PRSS1P07477 247 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 MGPP08493 103 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 RNASE3P12724 160 aaKnown RBP4.3□□□□□ -1.72
VPS39-209ENST00000568029 GATA1P15976 413 aaPredicted RBP4.3□□□□□ -1.72
VPS39-209ENST00000568029 DEFB136Q30KP8 78 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 DEFB114Q30KQ6 69 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 ORMDL2Q53FV1 153 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 SLC25A34Q6PIV7 304 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 ADAMTSL5Q6ZMM2 481 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 C14orf178Q8N769 122 aaPredicted RBP4.3□□□□□ -1.72
VPS39-209ENST00000568029 POM121L12Q8N7R1 296 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 DLX4Q92988 240 aaPredicted RBP4.3□□□□□ -1.72
VPS39-209ENST00000568029 SNHG12Q9BXW3 62 aa4.3□□□□□ -1.72
VPS39-209ENST00000568029 TSSC4Q9Y5U2 329 aaPredicted RBP4.3□□□□□ -1.72
VPS39-209ENST00000568029 IGLV2-18A0A075B6J9 118 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 A0A096LNJ9 63 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 IGHV3-16A0A0C4DH30 117 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 CCL24O00175 119 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 HLA-DRB4P13762 266 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 DEFB131AP59861 70 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 RPL32P62910 135 aaKnown RBP4.29□□□□□ -1.72
VPS39-209ENST00000568029 MAJINQ3KP22 176 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 COL5A1-AS1Q5SY13 56 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 C9orf85Q96MD7 179 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 SPAG8Q99932 426 aaPredicted RBP4.29□□□□□ -1.72
VPS39-209ENST00000568029 SMIM2Q9BVW6 85 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 HLA-DRB4X5D2U9 266 aa4.29□□□□□ -1.72
VPS39-209ENST00000568029 TRAV26-2A0A0B4J265 109 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 A0A1B0GV90 55 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 RBMY1BA6NDE4 496 aaKnown RBP4.28□□□□□ -1.72
VPS39-209ENST00000568029 RBMY1EA6NEQ0 496 aaKnown RBP4.28□□□□□ -1.72
VPS39-209ENST00000568029 KNCNA6PVL3 124 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 A8MTW9 85 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 H3BMM0 161 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.28□□□□□ -1.72
VPS39-209ENST00000568029 TCAPO15273 167 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 GAS8-AS1O95177 125 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 RBMY1DP0C7P1 496 aaKnown RBP4.28□□□□□ -1.72
VPS39-209ENST00000568029 FXYD7P58549 80 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 BATFQ16520 125 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 SPINK13Q1W4C9 94 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 DEFB121Q5J5C9 76 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 AMTNQ6UX39 209 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 RASL10AQ92737 203 aa4.28□□□□□ -1.72
VPS39-209ENST00000568029 UBR4Q5T4S7 5183 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 HERC1Q15751 4861 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 TRAV12-2A0A075B6T6 113 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 H7C1H1 209 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 DPM2O94777 84 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 TSHBP01222 138 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 COX8AP10176 69 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 CD28P10747 220 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 NUTF2P61970 127 aaKnown RBP4.27□□□□□ -1.73
VPS39-209ENST00000568029 TMEM61Q8N0U2 210 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 PTH2Q96A98 100 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 TOMM6Q96B49 74 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 C18orf15Q96N68 181 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 DUX3Q96PT4 197 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 SCGB3A1Q96QR1 104 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 KIR2DL4Q99706 377 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 B9D2Q9BPU9 175 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 LINC00467Q9BRT7 94 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 MCRIP2Q9BUT9 160 aaKnown RBP4.27□□□□□ -1.73
VPS39-209ENST00000568029 MDFICQ9P1T7 246 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 KIF25-AS1Q9Y6Z4 181 aa4.27□□□□□ -1.73
VPS39-209ENST00000568029 A0A087WX48 190 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 TRAV12-1A0A0B4J245 112 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 TRBV6-5A0A0K0K1A5 114 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 OR11H12B2RN74 326 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 C3orf84H3BNL1 204 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 SIVA1O15304 175 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 DLEU1O43261 78 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 INSP01308 110 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 IGKCP01834 107 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 LINC00315P59091 139 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 ZNF415Q09FC8 603 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 NSUN5P1Q3KNT7 163 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms