RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CHCHD7Q9BUK0 85 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 Q9HAA7 133 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 KLK12Q9UKR0 248 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 A0A087WTM6 91 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 SDHAF1A6NFY7 115 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 TSHBP01222 138 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 RBX1P62877 108 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 PNRC1Q12796 327 aaPredicted RBP6.11□□□□□ -1.43
VPS35-206ENST00000565228 RIGQ13278 110 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 TMEM70Q9BUB7 260 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 SEC11CQ9BY50 192 aa6.11□□□□□ -1.43
VPS35-206ENST00000565228 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.1□□□□□ -1.43
VPS35-206ENST00000565228 IGKV2-29A2NJV5 120 aaPredicted RBP6.1□□□□□ -1.43
VPS35-206ENST00000565228 H7C1H1 209 aa6.1□□□□□ -1.43
VPS35-206ENST00000565228 SPATA12Q7Z6I5 190 aa6.1□□□□□ -1.43
VPS35-206ENST00000565228 CHCHD5Q9BSY4 110 aa6.1□□□□□ -1.43
VPS35-206ENST00000565228 TMEM242Q9NWH2 141 aa6.1□□□□□ -1.43
VPS35-206ENST00000565228 CARHSP1Q9Y2V2 147 aaKnown RBP6.1□□□□□ -1.43
VPS35-206ENST00000565228 IGHV1-24A0A0C4DH33 117 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 NPYP01303 97 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 ESDP10768 282 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 HBBP68871 147 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 CLPSL2Q6UWE3 100 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 C10orf126Q8N4M7 172 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 FAM104AQ969W3 186 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 ANAPC16Q96DE5 110 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 MRAP2Q96G30 205 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 PRR34Q9NV39 138 aa6.09□□□□□ -1.43
VPS35-206ENST00000565228 TRBV25-1A0A075B6N4 114 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 TRAV9-2A0A087WT02 112 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 TRBV27A0A0K0K1C4 114 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 C7orf77A4D0Y5 90 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 D6R8Y8 96 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 TMEM262E9PQX1 116 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 K7EP13 123 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 LECT2O14960 151 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 PPP1R2P9O14990 202 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 MT-ND4LP03901 98 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 LAGE3Q14657 143 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 TMEM136Q6ZRR5 245 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 SLC7A5P1Q8MH63 180 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 CLRN3Q8NCR9 226 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 NTN5Q8WTR8 489 aaPredicted RBP6.08□□□□□ -1.44
VPS35-206ENST00000565228 FRZBQ92765 325 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 UBE2WQ96B02 151 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 BORCS7Q96B45 105 aa6.08□□□□□ -1.44
VPS35-206ENST00000565228 TRBV24-1A0A075B6N3 115 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 ANGP03950 147 aaKnown RBP6.07□□□□□ -1.44
VPS35-206ENST00000565228 COTL1Q14019 142 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 SMIM15Q7Z3B0 74 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 LINC00269Q8N2A0 174 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 BAALCQ8WXS3 180 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 TMEM243Q9BU79 118 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 ST20Q9HBF5 79 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 FAT1Q14517 4588 aa6.07□□□□□ -1.44
VPS35-206ENST00000565228 A0A087WX48 190 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 I3L3M4 83 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 TNFRSF6BO95407 300 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 AMTP48728 403 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 KRTAP10-1P60331 282 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 SUMO2P61956 95 aaKnown RBP6.06□□□□□ -1.44
VPS35-206ENST00000565228 ATP5L2Q7Z4Y8 100 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 NFE4Q86UQ8 179 aa6.06□□□□□ -1.44
VPS35-206ENST00000565228 A0A1B0GUV1 79 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 A0A1B0GW15 77 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 FGF6P10767 208 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 PMCHP20382 165 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 KIAA1644Q3SXP7 199 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 TMEM97Q5BJF2 176 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 YPEL4Q96NS1 127 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 IMMP2LQ96T52 175 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 URGCP-MRPS24S4R325 110 aa6.05□□□□□ -1.44
VPS35-206ENST00000565228 IGLV10-54A0A075B6I4 117 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 IGKV2D-24A0A075B6R9 120 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 TRAV8-3A0A0A6YYJ7 113 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 C16orf90A8MZG2 172 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 TCAPO15273 167 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 APCSP02743 223 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 CKS2P33552 79 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 REG3AQ06141 175 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 Q8N814 137 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 BTF3L4Q96K17 158 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 SMIM2Q9BVW6 85 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 KRTAP4-5Q9BYR2 181 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 CTDSP1Q9GZU7 261 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 RPS10P5Q9NQ39 176 aa6.04□□□□□ -1.44
VPS35-206ENST00000565228 TGIF2-C20orf24A0A0A6YYL0 155 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 VCYO14598 125 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 APOC3P02656 99 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 RPL39P62891 51 aaKnown RBP6.03□□□□□ -1.44
VPS35-206ENST00000565228 RPL32P62910 135 aaKnown RBP6.03□□□□□ -1.44
VPS35-206ENST00000565228 LINC01620Q4KN68 170 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 KCNIP4Q6PIL6 250 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 OPRPNQ99935 248 aaPredicted RBP6.03□□□□□ -1.44
VPS35-206ENST00000565228 C20orf78Q9BR46 151 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 FAM30AQ9NZY2 134 aa6.03□□□□□ -1.44
VPS35-206ENST00000565228 VPS13BQ7Z7G8 4022 aa6.02□□□□□ -1.44
VPS35-206ENST00000565228 PRSS47A8MTI9 375 aa6.02□□□□□ -1.45
VPS35-206ENST00000565228 HAMPP81172 84 aa6.02□□□□□ -1.45
VPS35-206ENST00000565228 RNASE13Q5GAN3 156 aaKnown RBP6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms