RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 hDV102S1A0JD36 115 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 TEX46H3BTG2 121 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 PDE6DO43924 150 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 SLPIP03973 132 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 SULT1A2P50226 295 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 MEF2BQ02080 365 aaPredicted RBP10.06□□□□□ -0.8
CLK3-211ENST00000563297 WDR73Q6P4I2 378 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 PGLYRP4Q96LB8 373 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 HMCN2Q8NDA2 5059 aa10.06□□□□□ -0.8
CLK3-211ENST00000563297 CIRBPQ14011 172 aaKnown RBP10.05□□□□□ -0.8
CLK3-211ENST00000563297 EIF5AL1Q6IS14 154 aaKnown RBP10.05□□□□□ -0.8
CLK3-211ENST00000563297 NUDT10Q8NFP7 164 aa10.05□□□□□ -0.8
CLK3-211ENST00000563297 NUDT11Q96G61 164 aa10.05□□□□□ -0.8
CLK3-211ENST00000563297 BIN3Q9NQY0 253 aa10.04□□□□□ -0.8
CLK3-211ENST00000563297 COTL1Q14019 142 aa10.03□□□□□ -0.8
CLK3-211ENST00000563297 AP5S1Q9NUS5 200 aa10.03□□□□□ -0.8
CLK3-211ENST00000563297 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 UBE2L6O14933 153 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 BCL2P10415 239 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 CTRLP40313 264 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 AMTP48728 403 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 TWIST1Q15672 202 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 GATD1Q8NB37 220 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 DPH3Q96FX2 82 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 CNFNQ9BYD5 112 aa10.02□□□□□ -0.81
CLK3-211ENST00000563297 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.01□□□□□ -0.81
CLK3-211ENST00000563297 PLA2G2DQ9UNK4 145 aa10.01□□□□□ -0.81
CLK3-211ENST00000563297 A0A087WYN8 130 aa10□□□□□ -0.81
CLK3-211ENST00000563297 CHTF8P0CG12 524 aa10□□□□□ -0.81
CLK3-211ENST00000563297 OCC1Q8TAD7 63 aa10□□□□□ -0.81
CLK3-211ENST00000563297 RNF185Q96GF1 192 aa10□□□□□ -0.81
CLK3-211ENST00000563297 RNASE7Q9H1E1 156 aaKnown RBP10□□□□□ -0.81
CLK3-211ENST00000563297 TRAV26-2A0A0B4J265 109 aa9.99□□□□□ -0.81
CLK3-211ENST00000563297 GAGE12HA6NDE8 117 aa9.99□□□□□ -0.81
CLK3-211ENST00000563297 K7EN84 100 aa9.99□□□□□ -0.81
CLK3-211ENST00000563297 MT1HL1P0DM35 61 aa9.99□□□□□ -0.81
CLK3-211ENST00000563297 C15orf56Q8N910 161 aa9.99□□□□□ -0.81
CLK3-211ENST00000563297 Q6ZRU5 148 aa9.98□□□□□ -0.81
CLK3-211ENST00000563297 SPACA4Q8TDM5 124 aa9.98□□□□□ -0.81
CLK3-211ENST00000563297 RPP21Q9H633 154 aaKnown RBP9.98□□□□□ -0.81
CLK3-211ENST00000563297 UBR4Q5T4S7 5183 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 IGKV3OR2-268A0A0C4DH90 116 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 TAGLN2P37802 199 aaKnown RBP9.97□□□□□ -0.81
CLK3-211ENST00000563297 FOXA3P55318 350 aaPredicted RBP9.97□□□□□ -0.81
CLK3-211ENST00000563297 CFAP161Q6P656 301 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 SLC51BQ86UW2 128 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 GTSF1Q8WW33 167 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 RPL39LQ96EH5 51 aaKnown RBP9.97□□□□□ -0.81
CLK3-211ENST00000563297 PLAC8Q9NZF1 115 aa9.97□□□□□ -0.81
CLK3-211ENST00000563297 RPS10P46783 165 aaKnown RBP9.96□□□□□ -0.82
CLK3-211ENST00000563297 NCR2O95944 276 aa9.95□□□□□ -0.82
CLK3-211ENST00000563297 COX6A2Q02221 97 aa9.95□□□□□ -0.82
CLK3-211ENST00000563297 AMMECR1LQ6DCA0 310 aa9.95□□□□□ -0.82
CLK3-211ENST00000563297 PRSS3P2Q8NHM4 247 aa9.95□□□□□ -0.82
CLK3-211ENST00000563297 CHCHD10Q8WYQ3 142 aaPredicted RBP9.95□□□□□ -0.82
CLK3-211ENST00000563297 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.94□□□□□ -0.82
CLK3-211ENST00000563297 IGKV2-29A2NJV5 120 aaPredicted RBP9.94□□□□□ -0.82
CLK3-211ENST00000563297 H7C423 109 aa9.94□□□□□ -0.82
CLK3-211ENST00000563297 HIGD2BQ4VC39 106 aa9.94□□□□□ -0.82
CLK3-211ENST00000563297 RNASEKQ6P5S7 137 aaKnown RBP9.94□□□□□ -0.82
CLK3-211ENST00000563297 TEX261Q6UWH6 196 aa9.94□□□□□ -0.82
CLK3-211ENST00000563297 SMIM15Q7Z3B0 74 aa9.94□□□□□ -0.82
CLK3-211ENST00000563297 SDHAF1A6NFY7 115 aa9.93□□□□□ -0.82
CLK3-211ENST00000563297 FGF6P10767 208 aa9.93□□□□□ -0.82
CLK3-211ENST00000563297 FAM231BA6NCW3 169 aa9.92□□□□□ -0.82
CLK3-211ENST00000563297 PHOX2AO14813 284 aa9.92□□□□□ -0.82
CLK3-211ENST00000563297 GATCO43716 136 aaKnown RBP9.92□□□□□ -0.82
CLK3-211ENST00000563297 NDUFS6O75380 124 aaKnown RBP9.92□□□□□ -0.82
CLK3-211ENST00000563297 APCSP02743 223 aa9.92□□□□□ -0.82
CLK3-211ENST00000563297 GVQW2A0A096LPI5 108 aaPredicted RBP9.91□□□□□ -0.82
CLK3-211ENST00000563297 TMEM250H0YL14 139 aa9.91□□□□□ -0.82
CLK3-211ENST00000563297 PMCHP20382 165 aa9.91□□□□□ -0.82
CLK3-211ENST00000563297 FOXI1Q12951 378 aa9.91□□□□□ -0.82
CLK3-211ENST00000563297 MAJINQ3KP22 176 aa9.91□□□□□ -0.82
CLK3-211ENST00000563297 FAM231DQ6ZW35 169 aa9.91□□□□□ -0.82
CLK3-211ENST00000563297 IGKV2-24A0A0C4DH68 120 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 TRBV6-5A0A0K0K1A5 114 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 A8MWL6 223 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 I3L3M4 83 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 GAS8-AS1O95177 125 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 OR5A1Q8NGJ0 315 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 C7orf33Q8WU49 177 aa9.9□□□□□ -0.82
CLK3-211ENST00000563297 ESDP10768 282 aa9.89□□□□□ -0.83
CLK3-211ENST00000563297 ZNF25P17030 456 aaPredicted RBP9.89□□□□□ -0.83
CLK3-211ENST00000563297 LINC00959A0A1B0GUT2 108 aa9.88□□□□□ -0.83
CLK3-211ENST00000563297 BLOC1S1P78537 153 aa9.88□□□□□ -0.83
CLK3-211ENST00000563297 STPG4Q8N801 248 aa9.88□□□□□ -0.83
CLK3-211ENST00000563297 LYPD6BQ8NI32 183 aa9.88□□□□□ -0.83
CLK3-211ENST00000563297 BTF3L4Q96K17 158 aa9.88□□□□□ -0.83
CLK3-211ENST00000563297 A0A096LNI7 61 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 CCL25O15444 150 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 TSHBP01222 138 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 XCL1P47992 114 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 CT83Q5H943 113 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 TMEM101Q96IK0 257 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 ST20Q9HBF5 79 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 TNXBP22105 4242 aa9.87□□□□□ -0.83
CLK3-211ENST00000563297 POLR2KP53803 58 aaKnown RBP9.86□□□□□ -0.83
CLK3-211ENST00000563297 ALKAL2Q6UX46 152 aa9.86□□□□□ -0.83
CLK3-211ENST00000563297 LINC00526Q96FQ7 95 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms