RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 C7orf77A4D0Y5 90 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 H7C423 109 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 PHOX2AO14813 284 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 APCSP02743 223 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 CKS2P33552 79 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 POLR2KP53803 58 aaKnown RBP8.74□□□□□ -1.01
NEDD8-208ENST00000560427 SUMO2P61956 95 aaKnown RBP8.74□□□□□ -1.01
NEDD8-208ENST00000560427 RPL32P62910 135 aaKnown RBP8.74□□□□□ -1.01
NEDD8-208ENST00000560427 TNP2Q05952 138 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 MPV17L2Q567V2 206 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 SVBPQ8N300 66 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 Q8N3U1 123 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 RMI2Q96E14 147 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 C20orf78Q9BR46 151 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 TM2D2Q9BX73 214 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 COX11Q9Y6N1 276 aa8.74□□□□□ -1.01
NEDD8-208ENST00000560427 EPPK1P58107 5090 aaKnown RBP8.73□□□□□ -1.01
NEDD8-208ENST00000560427 A0A1B0GUV1 79 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 VCYO14598 125 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 UBE2L6O14933 153 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 TCAPO15273 167 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 GAS8-AS1O95177 125 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 PMCHP20382 165 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 Q0VG73 95 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 KLK12Q9UKR0 248 aa8.73□□□□□ -1.01
NEDD8-208ENST00000560427 D6R8Y8 96 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 SMKR1H3BMG3 65 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 SNAPINO95295 136 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 CRPP02741 224 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 RBX1P62877 108 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 GAGE6Q13070 117 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 ATRAIDQ6UW56 229 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 ORMDL3Q8N138 153 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 Q9HAA7 133 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 LAMTOR2Q9Y2Q5 125 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 HECTD4Q9Y4D8 3996 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 DNAH17Q9UFH2 4485 aa8.72□□□□□ -1.01
NEDD8-208ENST00000560427 EREGO14944 169 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 PSCAO43653 123 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 APOC3P02656 99 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 ANGP03950 147 aaKnown RBP8.71□□□□□ -1.02
NEDD8-208ENST00000560427 COX19Q49B96 90 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 Q8N976 141 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 KIR2DL4Q99706 377 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 RPS10P5Q9NQ39 176 aa8.71□□□□□ -1.02
NEDD8-208ENST00000560427 TNFRSF6BO95407 300 aa8.7□□□□□ -1.02
NEDD8-208ENST00000560427 TSHBP01222 138 aa8.7□□□□□ -1.02
NEDD8-208ENST00000560427 MIAQ16674 131 aa8.7□□□□□ -1.02
NEDD8-208ENST00000560427 UBE2WQ96B02 151 aa8.7□□□□□ -1.02
NEDD8-208ENST00000560427 PRR34Q9NV39 138 aa8.7□□□□□ -1.02
NEDD8-208ENST00000560427 HLA-DQA1P01909 254 aa8.69□□□□□ -1.02
NEDD8-208ENST00000560427 ESDP10768 282 aa8.69□□□□□ -1.02
NEDD8-208ENST00000560427 ZNF25P17030 456 aaPredicted RBP8.69□□□□□ -1.02
NEDD8-208ENST00000560427 FCER1GP30273 86 aa8.69□□□□□ -1.02
NEDD8-208ENST00000560427 TMEM136Q6ZRR5 245 aa8.69□□□□□ -1.02
NEDD8-208ENST00000560427 SMIM2Q9BVW6 85 aa8.69□□□□□ -1.02
NEDD8-208ENST00000560427 A0A087WTM6 91 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 NPYP01303 97 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 SMAGPQ0VAQ4 97 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 AMMECR1LQ6DCA0 310 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 PRELID3AQ96N28 172 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 GNB1LQ9BYB4 327 aa8.68□□□□□ -1.02
NEDD8-208ENST00000560427 PRSS47A8MTI9 375 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 MT-ND6P03923 174 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 ENHOQ6UWT2 76 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 LINC00269Q8N2A0 174 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 C20orf203Q8NBC4 194 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 DEFB104AQ8WTQ1 72 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 C1orf43Q9BWL3 253 aa8.67□□□□□ -1.02
NEDD8-208ENST00000560427 IGKV2D-24A0A075B6R9 120 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.66□□□□□ -1.02
NEDD8-208ENST00000560427 TRAV8-4A0A0B4J246 113 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 IGKV2-29A2NJV5 120 aaPredicted RBP8.66□□□□□ -1.02
NEDD8-208ENST00000560427 FGF6P10767 208 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 REG3AQ06141 175 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 LCE2DQ5TA82 110 aaPredicted RBP8.66□□□□□ -1.02
NEDD8-208ENST00000560427 MRPL52Q86TS9 123 aaKnown RBP8.66□□□□□ -1.02
NEDD8-208ENST00000560427 TMEM18Q96B42 140 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 MAP1LC3AQ9H492 121 aa8.66□□□□□ -1.02
NEDD8-208ENST00000560427 BIRC6Q9NR09 4857 aa8.65□□□□□ -1.02
NEDD8-208ENST00000560427 IGLV4-60A0A075B6I1 120 aa8.65□□□□□ -1.02
NEDD8-208ENST00000560427 LRCOL1A6NCL2 159 aa8.65□□□□□ -1.02
NEDD8-208ENST00000560427 CDPF1Q6NVV7 123 aa8.65□□□□□ -1.02
NEDD8-208ENST00000560427 RNASEKQ6P5S7 137 aaKnown RBP8.65□□□□□ -1.02
NEDD8-208ENST00000560427 TMEM101Q96IK0 257 aa8.65□□□□□ -1.02
NEDD8-208ENST00000560427 CSDC2Q9Y534 153 aaKnown RBP8.65□□□□□ -1.02
NEDD8-208ENST00000560427 K7EMI3 77 aa8.64□□□□□ -1.03
NEDD8-208ENST00000560427 SPATA12Q7Z6I5 190 aa8.64□□□□□ -1.03
NEDD8-208ENST00000560427 OR5A1Q8NGJ0 315 aa8.64□□□□□ -1.03
NEDD8-208ENST00000560427 PGPEP1Q9NXJ5 209 aa8.64□□□□□ -1.03
NEDD8-208ENST00000560427 RAB5AP20339 215 aa8.63□□□□□ -1.03
NEDD8-208ENST00000560427 NTN5Q8WTR8 489 aaPredicted RBP8.63□□□□□ -1.03
NEDD8-208ENST00000560427 TIMM21Q9BVV7 248 aa8.63□□□□□ -1.03
NEDD8-208ENST00000560427 PKD1P98161 4303 aa8.62□□□□□ -1.03
NEDD8-208ENST00000560427 CLPSL2Q6UWE3 100 aa8.62□□□□□ -1.03
NEDD8-208ENST00000560427 Q8N814 137 aa8.62□□□□□ -1.03
NEDD8-208ENST00000560427 NXT2Q9NPJ8 142 aaKnown RBP8.62□□□□□ -1.03
NEDD8-208ENST00000560427 DNAH11Q96DT5 4516 aa8.61□□□□□ -1.03
NEDD8-208ENST00000560427 C16orf90A8MZG2 172 aa8.61□□□□□ -1.03
NEDD8-208ENST00000560427 DGAT2L7PQ6IED9 249 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms