RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 LINC00336Q6ZUF6 198 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 MRAP2Q96G30 205 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 AP1S3Q96PC3 154 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 Q9UF83 564 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 GAGE12JA6NER3 117 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 LINC00614P0C842 121 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 SMIM17P0DL12 118 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 AMTP48728 403 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 SSTP61278 116 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 S100A12P80511 92 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 GAGE1Q13065 139 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 GAGE4Q13068 117 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 GAGE5Q13069 117 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 JOSD1Q15040 202 aaPredicted RBP6.39□□□□□ -1.39
LDLR-211ENST00000560173 C21orf62-AS1Q17RA5 79 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 IQCJQ1A5X6 159 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 GAGE13Q4V321 117 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 C1orf134Q5TEV5 83 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 FA2HQ7L5A8 372 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 WFDC10BQ8IUB3 73 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 ATP6V0E2Q8NHE4 81 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 PRSS3P2Q8NHM4 247 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 PRELID3AQ96N28 172 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 MSRB1Q9NZV6 116 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 KIF25-AS1Q9Y6Z4 181 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 ABCA13Q86UQ4 5058 aa6.39□□□□□ -1.39
LDLR-211ENST00000560173 TRBV10-1A0A0K0K1A3 114 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 D6R8Y8 96 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 LINC00315P59091 139 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 ZNF56Q15929 161 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 MRPL51Q4U2R6 128 aaKnown RBP6.38□□□□□ -1.39
LDLR-211ENST00000560173 RNASEKQ6P5S7 137 aaKnown RBP6.38□□□□□ -1.39
LDLR-211ENST00000560173 NIT1Q86X76 327 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 AMN1Q8IY45 258 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 C6orf223Q8N319 242 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 GTSF1LQ9H1H1 148 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 MAP1LC3AQ9H492 121 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 DPH3P1Q9H4G8 78 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 NXT2Q9NPJ8 142 aaKnown RBP6.38□□□□□ -1.39
LDLR-211ENST00000560173 AP5S1Q9NUS5 200 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 PKHD1P08F94 4074 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 DNAH11Q96DT5 4516 aa6.38□□□□□ -1.39
LDLR-211ENST00000560173 PKD1P98161 4303 aa6.37□□□□□ -1.39
LDLR-211ENST00000560173 DNAH10OSP0CZ25 163 aa6.37□□□□□ -1.39
LDLR-211ENST00000560173 LELP1Q5T871 98 aa6.37□□□□□ -1.39
LDLR-211ENST00000560173 HSPB8Q9UJY1 196 aa6.37□□□□□ -1.39
LDLR-211ENST00000560173 TRAV8-6A0A0B4J262 113 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 PRSS29PA6NIE9 313 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 K7EMI3 77 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 BTF3P20290 206 aaKnown RBP6.36□□□□□ -1.39
LDLR-211ENST00000560173 LINC00310P59036 64 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 UBE2D3P61077 147 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 UBE2D2P62837 147 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 RNF185Q96GF1 192 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 NIT2Q9NQR4 276 aa6.36□□□□□ -1.39
LDLR-211ENST00000560173 TRBV7-3A0A075B6L6 115 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 IGHV3-38A0A0C4DH36 116 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 A0A1B0GVY2 172 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 C20orf202A1L168 122 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 LINC01549A6NIU2 74 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 F5H697 171 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 K7EP13 123 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 NUPR1O60356 82 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 MGPP08493 103 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 EVI2AP22794 236 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 G0S2P27469 103 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 RPL36AP83881 106 aaKnown RBP6.35□□□□□ -1.39
LDLR-211ENST00000560173 PYY3Q5JQD4 70 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 LINC01556Q5JQF7 62 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 NEXN-AS1Q8NBZ9 246 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 RPL36ALQ969Q0 106 aaKnown RBP6.35□□□□□ -1.39
LDLR-211ENST00000560173 C20orf78Q9BR46 151 aa6.35□□□□□ -1.39
LDLR-211ENST00000560173 TRAV9-2A0A087WT02 112 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 M0QY20 66 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 LEPROTL1O95214 131 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 TNFRSF6BO95407 300 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 SCGB1D1O95968 90 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 SUMO4Q6EEV6 95 aa6.34□□□□□ -1.39
LDLR-211ENST00000560173 DYNC1H1Q14204 4646 aaKnown RBP6.34□□□□□ -1.4
LDLR-211ENST00000560173 LINC01546A6NGU7 62 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 H7C1H1 209 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 TCAPO15273 167 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 RPL32P62910 135 aaKnown RBP6.33□□□□□ -1.4
LDLR-211ENST00000560173 TNP2Q05952 138 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 PMCHL1Q16048 86 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 Q6ZRN7 208 aaPredicted RBP6.33□□□□□ -1.4
LDLR-211ENST00000560173 C10orf126Q8N4M7 172 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 Q8N8P6 123 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 MAP1LC3CQ9BXW4 147 aa6.33□□□□□ -1.4
LDLR-211ENST00000560173 IGHV1-24A0A0C4DH33 117 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 TSTD3H0UI37 97 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 NPYP01303 97 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 HBDP02042 147 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 IFI27P40305 119 aaPredicted RBP6.32□□□□□ -1.4
LDLR-211ENST00000560173 KRTDAPP60985 99 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 FAM19A2Q8N3H0 131 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 Q8N3U1 123 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 DNAJC30Q96LL9 226 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 TMEM70Q9BUB7 260 aa6.32□□□□□ -1.4
LDLR-211ENST00000560173 TNFRSF18Q9Y5U5 241 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms