RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.42□□□□□ -1.06
LDLR-208ENST00000558518 IGHV1-69DA0A0B4J2H0 117 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 TMEM223A0PJW6 202 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 ICOSQ9Y6W8 199 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 TIMM17AQ99595 171 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 U3KQE9 123 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 IGLV4-3A0A075B6K6 122 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 FAM223BA6NKX1 122 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 LINC01619G3V211 115 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 I3L3M4 83 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 SNRPD3P62318 126 aaKnown RBP8.41□□□□□ -1.06
LDLR-208ENST00000558518 FAM223AQ8IWN6 122 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 LENEPQ9Y5L5 61 aa8.41□□□□□ -1.06
LDLR-208ENST00000558518 TRAV13-1A0A0B4J241 112 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 M0QY20 66 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 IGHV3-53P01767 116 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 NHLRC4P0CG21 123 aaPredicted RBP8.4□□□□□ -1.06
LDLR-208ENST00000558518 C20orf203Q8NBC4 194 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 KIF25-AS1Q9Y6Z4 181 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 PKD1L2Q7Z442 2459 aa8.4□□□□□ -1.06
LDLR-208ENST00000558518 HOXD3P31249 432 aaPredicted RBP8.4□□□□□ -1.06
LDLR-208ENST00000558518 DEFB136Q30KP8 78 aa8.4□□□□□ -1.07
LDLR-208ENST00000558518 CHD6Q8TD26 2715 aa8.39□□□□□ -1.07
LDLR-208ENST00000558518 IGHV1OR15-1A0A075B7D0 117 aa8.39□□□□□ -1.07
LDLR-208ENST00000558518 LMO4P61968 165 aa8.39□□□□□ -1.07
LDLR-208ENST00000558518 FBN2P35556 2912 aa8.39□□□□□ -1.07
LDLR-208ENST00000558518 AMELXQ99217 191 aa8.39□□□□□ -1.07
LDLR-208ENST00000558518 TRBV10-2A0A0K0K1G8 114 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 H7C423 109 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 C11orf71Q6IPW1 123 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 SHISA2Q6UWI4 295 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 IGHV4-61A0A0C4DH41 118 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 TRBV27A0A0K0K1C4 114 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 SOCS3O14543 225 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 IGHV1-69P01742 117 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 TOMM7Q9P0U1 55 aa8.38□□□□□ -1.07
LDLR-208ENST00000558518 ANKRD17O75179 2603 aaKnown RBP8.38□□□□□ -1.07
LDLR-208ENST00000558518 TRGV11A0A075B6L2 103 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 NDUFA7O95182 113 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 KLRB1Q12918 225 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 C11orf44Q8N8P7 122 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 ODF3Q96PU9 254 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 FAM236AA0A1B0GUQ0 79 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 FAM236BA0A1B0GV22 79 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 DEFB131AP59861 70 aa8.37□□□□□ -1.07
LDLR-208ENST00000558518 IGHV4OR15-8A0A075B7B6 117 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 A0A087WW49 117 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 K7ENP7 123 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 POM121L12Q8N7R1 296 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 NRGNQ92686 78 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 TRBV7-9A0A0J9YWB2 115 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 CITED1Q99966 193 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 CDKN2A-AS1Q9UH64 79 aa8.36□□□□□ -1.07
LDLR-208ENST00000558518 MRPL23Q16540 153 aaKnown RBP8.35□□□□□ -1.07
LDLR-208ENST00000558518 UBE2E2Q96LR5 201 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 LINC01587Q99440 93 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 Q9H8V8 135 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 A0A0B4J2C4 111 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 LGALS9O00182 355 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 NXPH4O95158 308 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 ATP5J2P56134 94 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 SVIPQ8NHG7 77 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 KLLNB2CW77 178 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 RPL32P62910 135 aaKnown RBP8.35□□□□□ -1.07
LDLR-208ENST00000558518 C11orf68Q9H3H3 251 aaKnown RBP8.35□□□□□ -1.07
LDLR-208ENST00000558518 Q9HAA7 133 aa8.35□□□□□ -1.07
LDLR-208ENST00000558518 GAGE2AQ6NT46 116 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 USMG5Q96IX5 58 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 NF1P21359 2839 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 ACANP16112 2415 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 C19orf84I3L1E1 186 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 IGHV4-59P01825 116 aa8.34□□□□□ -1.07
LDLR-208ENST00000558518 CFHR3Q02985 330 aa8.34□□□□□ -1.08
LDLR-208ENST00000558518 APRG1Q8IVJ8 170 aa8.34□□□□□ -1.08
LDLR-208ENST00000558518 Q6ZSN1 163 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 DCANP1Q8TF63 244 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 LINC00467Q9BRT7 94 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 HIVEP2P31629 2446 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 NBEAL2Q6ZNJ1 2754 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 PRIMA1Q86XR5 153 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 A0A0J9YX75 114 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 CIRBPQ14011 172 aaKnown RBP8.33□□□□□ -1.08
LDLR-208ENST00000558518 RHOHQ15669 191 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 SBSPONQ8IVN8 264 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 XCL2Q9UBD3 114 aa8.33□□□□□ -1.08
LDLR-208ENST00000558518 NOTCH2Q04721 2471 aa8.32□□□□□ -1.08
LDLR-208ENST00000558518 IGHV1-58A0A0C4DH39 117 aa8.32□□□□□ -1.08
LDLR-208ENST00000558518 MED14OSP0DP75 135 aa8.32□□□□□ -1.08
LDLR-208ENST00000558518 RNASE1P07998 156 aaKnown RBP8.31□□□□□ -1.08
LDLR-208ENST00000558518 PIK3CD-AS1Q5SR53 167 aa8.31□□□□□ -1.08
LDLR-208ENST00000558518 KLK5Q9Y337 293 aaPredicted RBP8.31□□□□□ -1.08
LDLR-208ENST00000558518 NIPBLQ6KC79 2804 aaeCLIP8.31□□□□□ -1.08
LDLR-208ENST00000558518 C9orf153Q5TBE3 101 aa8.31□□□□□ -1.08
LDLR-208ENST00000558518 NSUN5P1Q3KNT7 163 aa8.31□□□□□ -1.08
LDLR-208ENST00000558518 TRBV30A0A0K0K1B3 111 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 MIAQ16674 131 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 IGHG2P01859 326 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 VSIG2Q96IQ7 327 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 EDA2RQ9HAV5 297 aa8.3□□□□□ -1.08
LDLR-208ENST00000558518 IGHV4-30-2A0A087WSY4 118 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms