RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 Q0VG73 95 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 RIGQ13278 110 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 CLPSL2Q6UWE3 100 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 AMN1Q8IY45 258 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 NTN5Q8WTR8 489 aaPredicted RBP9.08□□□□□ -0.96
SHMT2-219ENST00000555563 RNF185Q96GF1 192 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 IGLV5-52A0A0A0MRZ9 124 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 KRTAP10-1P60331 282 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 CLLU1Q5K131 121 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 BAALCQ8WXS3 180 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 C1orf43Q9BWL3 253 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 PRR34Q9NV39 138 aa9.07□□□□□ -0.96
SHMT2-219ENST00000555563 SDHAF1A6NFY7 115 aa9.06□□□□□ -0.96
SHMT2-219ENST00000555563 RAB4AP20338 218 aa9.06□□□□□ -0.96
SHMT2-219ENST00000555563 RPS10P46783 165 aaKnown RBP9.06□□□□□ -0.96
SHMT2-219ENST00000555563 MRAP2Q96G30 205 aa9.06□□□□□ -0.96
SHMT2-219ENST00000555563 HSPG2P98160 4391 aa9.06□□□□□ -0.96
SHMT2-219ENST00000555563 IGLV4-60A0A075B6I1 120 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 TRBV6-5A0A0K0K1A5 114 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 NCR2O95944 276 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 GCSHP23434 173 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 IFITM2Q01629 132 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 MIAQ16674 131 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 LINC00269Q8N2A0 174 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 C20orf203Q8NBC4 194 aa9.05□□□□□ -0.96
SHMT2-219ENST00000555563 UBE2L6O14933 153 aa9.04□□□□□ -0.96
SHMT2-219ENST00000555563 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.03□□□□□ -0.96
SHMT2-219ENST00000555563 A0A1B0GUV1 79 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 SMKR1H3BMG3 65 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 HLA-DQA1P01909 254 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 APCSP02743 223 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 CAMPP49913 170 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 REG3AQ06141 175 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 TMEM70Q9BUB7 260 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 ST20Q9HBF5 79 aa9.03□□□□□ -0.96
SHMT2-219ENST00000555563 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-219ENST00000555563 IGKV2-29A2NJV5 120 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-219ENST00000555563 I3L3M4 83 aa9.02□□□□□ -0.97
SHMT2-219ENST00000555563 PNRC1Q12796 327 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-219ENST00000555563 MRPL54Q6P161 138 aaKnown RBP9.02□□□□□ -0.97
SHMT2-219ENST00000555563 TMEM242Q9NWH2 141 aa9.02□□□□□ -0.97
SHMT2-219ENST00000555563 LRP1BQ9NZR2 4599 aa9.02□□□□□ -0.97
SHMT2-219ENST00000555563 IGLV10-54A0A075B6I4 117 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 A0A1B0GW15 77 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 A0A1B0GXF2 115 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 TSHBP01222 138 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 PMCHP20382 165 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 HBBP68871 147 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 FAM104BQ5XKR9 115 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 KRTAP26-1Q6PEX3 210 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 NRACQ8N912 160 aa9.01□□□□□ -0.97
SHMT2-219ENST00000555563 PPP1R2P9O14990 202 aa9□□□□□ -0.97
SHMT2-219ENST00000555563 POLR2KP53803 58 aaKnown RBP9□□□□□ -0.97
SHMT2-219ENST00000555563 XGP55808 180 aa9□□□□□ -0.97
SHMT2-219ENST00000555563 MRPL51Q4U2R6 128 aaKnown RBP9□□□□□ -0.97
SHMT2-219ENST00000555563 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
SHMT2-219ENST00000555563 TRBV27A0A0K0K1C4 114 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 USP17L23D6RBM5 183 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 H7C423 109 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 S100A8P05109 93 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 FGF6P10767 208 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 AMMECR1LQ6DCA0 310 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 DNAH5Q8TE73 4624 aa8.99□□□□□ -0.97
SHMT2-219ENST00000555563 PPP1R17O96001 155 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 ESDP10768 282 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 ADCYAP1P18509 176 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 SUMO2P61956 95 aaKnown RBP8.98□□□□□ -0.97
SHMT2-219ENST00000555563 HAMPP81172 84 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 RNASEKQ6P5S7 137 aaKnown RBP8.98□□□□□ -0.97
SHMT2-219ENST00000555563 UQCC3Q6UW78 93 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 Q8N1X5 172 aa8.98□□□□□ -0.97
SHMT2-219ENST00000555563 TRAV8-4A0A0B4J246 113 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 F8W036 122 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 MT-ND4LP03901 98 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 LINC01620Q4KN68 170 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 C14orf177Q52M58 125 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 ATP5L2Q7Z4Y8 100 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 ANAPC16Q96DE5 110 aa8.97□□□□□ -0.97
SHMT2-219ENST00000555563 IGKV3OR2-268A0A0C4DH90 116 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 LINC00862A6NCI5 91 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 D6R8Y8 96 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 VCYO14598 125 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 ZNF25P17030 456 aaPredicted RBP8.96□□□□□ -0.98
SHMT2-219ENST00000555563 FCER1GP30273 86 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 CKS2P33552 79 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 FAM30AQ9NZY2 134 aa8.96□□□□□ -0.98
SHMT2-219ENST00000555563 TMEM218A2RU14 115 aa8.95□□□□□ -0.98
SHMT2-219ENST00000555563 C7orf77A4D0Y5 90 aa8.95□□□□□ -0.98
SHMT2-219ENST00000555563 COMMD7Q86VX2 200 aa8.95□□□□□ -0.98
SHMT2-219ENST00000555563 C20orf78Q9BR46 151 aa8.95□□□□□ -0.98
SHMT2-219ENST00000555563 APOBP04114 4563 aaKnown RBP8.94□□□□□ -0.98
SHMT2-219ENST00000555563 TRBV24-1A0A075B6N3 115 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 TNFRSF6BO95407 300 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 PRSS1P07477 247 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 Q6ZSA8 131 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 OR5A1Q8NGJ0 315 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 BTF3L4Q96K17 158 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 KIR2DL4Q99706 377 aa8.94□□□□□ -0.98
SHMT2-219ENST00000555563 NPYP01303 97 aa8.93□□□□□ -0.98
SHMT2-219ENST00000555563 RPL32P62910 135 aaKnown RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms