RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 I3L3M4 83 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 RHODO00212 210 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 Q6ZSN1 163 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 SIGMAR1Q99720 223 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 ZNF702PQ9H963 129 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 TRAV2A0A0B4J234 112 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 A4D1N5 150 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 H7C2G1 150 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 FOXI1Q12951 378 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 C10orf126Q8N4M7 172 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 RAX2Q96IS3 184 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 SPATA25Q9BR10 227 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 SPXQ9BT56 116 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 VPREB3Q9UKI3 123 aa5.49□□□□□ -1.53
LIMA1-213ENST00000552720 TRAV8-3A0A0A6YYJ7 113 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 A8MZ25 164 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 J3QR89 54 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 PRB1P04280 392 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 FHL3Q13643 280 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 RHOHQ15669 191 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 VCX2Q9H322 139 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 C2CD3Q4AC94 2353 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 FLNAP21333 2647 aaKnown RBP5.48□□□□□ -1.53
LIMA1-213ENST00000552720 LEPROTO15243 131 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 GATA3P23771 443 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 MUSTN1Q8IVN3 82 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 C1QTNF4Q9BXJ3 329 aa5.48□□□□□ -1.53
LIMA1-213ENST00000552720 CCDC168Q8NDH2 2452 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 TRGV11A0A075B6L2 103 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 IGHV3-38A0A0C4DH36 116 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 CD28P10747 220 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 KRTAP10-9P60411 292 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 TMEM61Q8N0U2 210 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 UBE2E2Q96LR5 201 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 CARD19Q96LW7 228 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 PRO1854Q9UHT4 67 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 TMEM89A2RUT3 159 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 ELANEP08246 267 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 SCGB1C2P0DMR2 95 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 Q6YL49 198 aa5.47□□□□□ -1.53
LIMA1-213ENST00000552720 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-213ENST00000552720 A0A0J9YXY3 114 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 IGKV2-29A2NJV5 120 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-213ENST00000552720 H3BMM0 161 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 IGHV3-30-3P0DP02 117 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 NPC2P61916 151 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 KHDC1LQ5JSQ8 128 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 TMEM263Q8WUH6 116 aaKnown RBP5.46□□□□□ -1.54
LIMA1-213ENST00000552720 CDIP1Q9H305 208 aa5.46□□□□□ -1.54
LIMA1-213ENST00000552720 TENM4Q6N022 2769 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 LCE2BO14633 110 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 IGHV3-33P01772 117 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 DSCR9P59020 149 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 ADAMTSL4-AS1Q5T5F5 129 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 Q6ZSV7 163 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 TNFRSF18Q9Y5U5 241 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 FSHBP01225 129 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 IGHV4-31P0DP07 118 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 ANKRD29Q8N6D5 301 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 CHCHD7Q9BUK0 85 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 TIMM21Q9BVV7 248 aa5.45□□□□□ -1.54
LIMA1-213ENST00000552720 M0R2P5 195 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 SPINK8P0C7L1 97 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 MRPS36P82909 103 aaKnown RBP5.44□□□□□ -1.54
LIMA1-213ENST00000552720 Q6ZUT4 128 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 TEN1Q86WV5 123 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 RNF152Q8N8N0 203 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 ATP6V0E2Q8NHE4 81 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 LITAFQ99732 161 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 LINC00467Q9BRT7 94 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 MAP6D1Q9H9H5 199 aa5.44□□□□□ -1.54
LIMA1-213ENST00000552720 C9JAW5 83 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 J3QLI3 93 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 PRSS2P07478 247 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 Q1RN00 199 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 LINC01587Q99440 93 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 UBE2D4Q9Y2X8 147 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 ACANP16112 2415 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 A8MWV9 139 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 ZNF561-AS1K7EIQ3 104 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 MT-ATP8P03928 68 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 XGP55808 180 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 LYRM7Q5U5X0 104 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 SBSPONQ8IVN8 264 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 C11orf44Q8N8P7 122 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 C11orf72Q8NBR9 251 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 ERG28Q9UKR5 140 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 PYGO1Q9Y3Y4 419 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 MTORP42345 2549 aa5.43□□□□□ -1.54
LIMA1-213ENST00000552720 TRBV20-1A0A075B6N2 111 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 IGHV3OR16-12A0A075B7B8 117 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 SLC25A20O43772 301 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 ZNF415Q09FC8 603 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 Q5PR19 223 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-213ENST00000552720 DAND5Q8N907 189 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 PPDPFLQ8WWR9 84 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 EDA2RQ9HAV5 297 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 XCL2Q9UBD3 114 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 A0A0B4J2C4 111 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms