RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	KIF25-AS1	Q9Y6Z4	181 aa		5.1	□□□□□ -1.59
SNHG1-223	ENST00000545440	IGLV5-37	A0A075B6J1	123 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440		A0A087WX48	190 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	IGLV5-52	A0A0A0MRZ9	124 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	TRBV6-8	A0A0A6YYG3	113 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	MUC21	A0A0G2JKD1	596 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	MUC21	A0A140T8X8	626 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	RBFOX3	A6NFN3	312 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440		F2Z2F3	143 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440		H7C1H1	209 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	CTRL	P40313	264 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	KRTAP10-1	P60331	282 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	PKIA	P61925	76 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	ELOB	Q15370	118 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	TMEM97	Q5BJF2	176 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	KCNIP4	Q6PIL6	250 aa		5.09	□□□□□ -1.59
SNHG1-223	ENST00000545440	TMEM250	H0YL14	139 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	TRGC1	P0CF51	173 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	GZMB	P10144	247 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	ATRAID	Q6UW56	229 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	ALKAL2	Q6UX46	152 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	LYPD6B	Q8NI32	183 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	TPPP3	Q9BW30	176 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440	CNFN	Q9BYD5	112 aa		5.08	□□□□□ -1.6
SNHG1-223	ENST00000545440		M0QY20	66 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	NDUFS6	O75380	124 aa	Known RBP	5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	MGP	P08493	103 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	XG	P55808	180 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	SST	P61278	116 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440		Q0VG73	95 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	WFDC2	Q14508	124 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	DNAJC30	Q96LL9	226 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	TMEM70	Q9BUB7	260 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	KRTAP4-11	Q9BYQ6	195 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	RPP21	Q9H633	154 aa	Known RBP	5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	KLK12	Q9UKR0	248 aa		5.07	□□□□□ -1.6
SNHG1-223	ENST00000545440	TRBV25-1	A0A075B6N4	114 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	IGKV2D-24	A0A075B6R9	120 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440		K7EN84	100 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	CRP	P02741	224 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	MPV17L2	Q567V2	206 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	LYZL1	Q6UWQ5	148 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	UBE2W	Q96B02	151 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	CHCHD5	Q9BSY4	110 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	RNASE7	Q9H1E1	156 aa	Known RBP	5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	DPH3P1	Q9H4G8	78 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	ABCA13	Q86UQ4	5058 aa		5.06	□□□□□ -1.6
SNHG1-223	ENST00000545440	EPM2A	B3EWF7	344 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	TMEM262	E9PQX1	116 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	NTF3	P20783	257 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	SNRPE	P62304	92 aa	Known RBP	5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	MIA	Q16674	131 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	IQCJ	Q1A5X6	159 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	RASL11A	Q6T310	242 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	NTM-AS1	Q6ZSK4	140 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	FAM231D	Q6ZW35	169 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	OCC1	Q8TAD7	63 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	FRZB	Q92765	325 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	PGLYRP4	Q96LB8	373 aa		5.05	□□□□□ -1.6
SNHG1-223	ENST00000545440	IGHV1-24	A0A0C4DH33	117 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	LECT2	O14960	151 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	ANG	P03950	147 aa	Known RBP	5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	NKX2-5	P52952	324 aa	Predicted RBP	5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	ENHO	Q6UWT2	76 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440		Q6ZSA8	131 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	C15orf54	Q8N8G6	183 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440		Q8N976	141 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	GTSF1	Q8WW33	167 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	BAALC	Q8WXS3	180 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	PRR34	Q9NV39	138 aa		5.04	□□□□□ -1.6
SNHG1-223	ENST00000545440	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440		A8MWL6	223 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	RBX1	P62877	108 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	GAGE2B	Q13066	116 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	GAGE2E	Q4V326	116 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	C14orf177	Q52M58	125 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	PAPPA-AS1	Q5QFB9	102 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440		Q5VSD8	79 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	GAGE2A	Q6NT46	116 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	FAM210A	Q96ND0	272 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	SMIM7	Q9BQ49	75 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	EIF5A2	Q9GZV4	153 aa	Known RBP	5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	NIT2	Q9NQR4	276 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440	GAGE2D	Q9UEU5	116 aa		5.03	□□□□□ -1.6
SNHG1-223	ENST00000545440		A0A1B0GUV1	79 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440		A0A1B0GVG6	124 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	GATC	O43716	136 aa	Known RBP	5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	CEBPG	P53567	150 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	FOXA3	P55318	350 aa	Predicted RBP	5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	GAGE6	Q13070	117 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	TEX261	Q6UWH6	196 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	SMIM15	Q7Z3B0	74 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	LINC01551	Q86U37	167 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	TMEM243	Q9BU79	118 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	GFRA4	Q9GZZ7	299 aa		5.02	□□□□□ -1.61
SNHG1-223	ENST00000545440	FAM231B	A6NCW3	169 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	ZNF727	A8MUV8	499 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	HLA-DQA1	P01909	254 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	REG3A	Q06141	175 aa		5.01	□□□□□ -1.61
SNHG1-223	ENST00000545440	COTL1	Q14019	142 aa		5.01	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms