RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TRAV12-2A0A075B6T6 113 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 TCRBV3S1A0A5B6 114 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 SCTP09683 121 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 HLA-DRB4P13762 266 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 LRP2P98164 4655 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 TMEM91Q6ZNR0 172 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 AKAP14Q86UN6 197 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 SNX29P2Q8IUI4 249 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 CTAGE3PQ8IX95 158 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 HLA-DRB4X5D2U9 266 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 MYOM1P52179 1685 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 RREB1Q92766 1687 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 DNAH1Q9P2D7 4330 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 ANK2Q01484 3957 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 HECTD4Q9Y4D8 3996 aa0.42□□□□□ -2.34
CD44-238ENST00000534296 DMDP11532 3685 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 DYNC2H1Q8NCM8 4307 aaKnown RBP0.41□□□□□ -2.34
CD44-238ENST00000534296 F5P12259 2224 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 COL4A6Q14031 1691 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 A0A1B0GW64 132 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 J3QR89 54 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 TNFSF15O95150 251 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 OR2H2O95918 312 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 CLLU1Q5K131 121 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 LELP1Q5T871 98 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 ATP6V0E2Q8NHE4 81 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 DYNLRB2Q8TF09 96 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 PRO3102Q9H379 93 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 ERG28Q9UKR5 140 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 HIGD1AQ9Y241 93 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 CUX1P39880 1505 aa0.41□□□□□ -2.34
CD44-238ENST00000534296 RB1CC1Q8TDY2 1594 aa0.4□□□□□ -2.34
CD44-238ENST00000534296 ALMS1Q8TCU4 4167 aa0.4□□□□□ -2.34
CD44-238ENST00000534296 LAMB1P07942 1786 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 KCPQ6ZWJ8 1503 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 NBDYA0A0U1RRE5 68 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 LOC105371267A0A1B0GV96 52 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 RBAKDNA6NC62 111 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 PHGR1C9JFL3 82 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 CYP2G1PQ6ZSU1 146 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 SMR3AQ99954 134 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 PRR15LQ9BU68 103 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 BATF3Q9NR55 127 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 GSKIPQ9P0R6 139 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 CHD1O14646 1710 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 HSPG2P98160 4391 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 WIZO95785 1651 aa0.4□□□□□ -2.35
CD44-238ENST00000534296 CCDC171Q6TFL3 1326 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 STARD9Q9P2P6 4700 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 CSMD3Q7Z407 3707 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 A6NIN4 97 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 CCDC179H3BU77 68 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 J3QLW9 94 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 PRH1P02810 166 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 SCGB1A1P11684 91 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 MORN2Q502X0 79 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 FAM74A4Q5TZK3 123 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 RPL7L1Q6DKI1 246 aaKnown RBP0.39□□□□□ -2.35
CD44-238ENST00000534296 NDUFA11Q86Y39 141 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 ABCC10Q5T3U5 1492 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 ADGRB1O14514 1584 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 LOC285556D6RIA3 1793 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 MUC22E2RYF6 1773 aaPredicted RBP0.39□□□□□ -2.35
CD44-238ENST00000534296 TANC1Q9C0D5 1861 aa0.39□□□□□ -2.35
CD44-238ENST00000534296 CMYA5Q8N3K9 4069 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 KNL1Q8NG31 2342 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 AKAP9Q99996 3911 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 DIP2AQ14689 1571 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 MPC1LP0DKB6 136 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 ALX1Q15699 326 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 ATP11AUNQ6ZP68 121 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 SAR1AQ9NR31 198 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 DNAJC15Q9Y5T4 150 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 KIF21BO75037 1637 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 MADDQ8WXG6 1647 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 MAP3K4Q9Y6R4 1608 aa0.38□□□□□ -2.35
CD44-238ENST00000534296 PKD1P98161 4303 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 ARPC5O15511 151 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 PYYP10082 97 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 COX4I1P13073 169 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 VMO1Q7Z5L0 202 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 BPESC1Q9GZL8 116 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 TULP4Q9NRJ4 1543 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 PREX1Q8TCU6 1659 aa0.37□□□□□ -2.35
CD44-238ENST00000534296 DNAH9Q9NYC9 4486 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 PHIPQ8WWQ0 1821 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 UHRF1BP1LA0JNW5 1464 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 ARHGEF10O15013 1369 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 CPDO75976 1380 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 MYH9P35579 1960 aaKnown RBP0.36□□□□□ -2.35
CD44-238ENST00000534296 MYO7AQ13402 2215 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 M0R2Z0 102 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 SPINK1P00995 79 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 APODP05090 189 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 SLC25A6P12236 298 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 KRTAP21-1Q3LI58 79 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 PSMG3Q9BT73 122 aaPredicted RBP0.36□□□□□ -2.35
CD44-238ENST00000534296 SCP2D1Q9UJQ7 156 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 KIAA0586Q9BVV6 1533 aa0.36□□□□□ -2.35
CD44-238ENST00000534296 FAM135AQ9P2D6 1515 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms