RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 FAM27BQ5VT28 67 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 C11orf71Q6IPW1 123 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 SCXQ7RTU7 201 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 C11orf72Q8NBR9 251 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 ITLN2Q8WWU7 325 aaPredicted RBP3.86□□□□□ -1.79
CD44-236ENST00000533222 MRPL36Q9P0J6 103 aaKnown RBP3.86□□□□□ -1.79
CD44-236ENST00000533222 COL4A5P29400 1685 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 A0A087WYN8 130 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 IGKV3D-7A0A0C4DH55 119 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 C16orf90A8MZG2 172 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 NDUFB1O75438 58 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 CTSGP08311 255 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 DEFB114Q30KQ6 69 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 FAM229BQ4G0N7 80 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 ADAMTSL4-AS1Q5T5F5 129 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 C2orf66Q6UXQ4 117 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 RMI2Q96E14 147 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 KRTAP1-5Q9BYS1 174 aa3.85□□□□□ -1.79
CD44-236ENST00000533222 FER1L5A0AVI2 2057 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 TRAV23DV6A0A075B6W5 121 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 IGKV1OR2-108A0A075B7D4 117 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 A0A087WW49 117 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 Q5VV11 94 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 SOSTDC1Q6X4U4 206 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 C14orf178Q8N769 122 aaPredicted RBP3.84□□□□□ -1.79
CD44-236ENST00000533222 KLHL30-AS1Q8NEE0 82 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 CLEC2BQ92478 149 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 LINC00167Q96N53 147 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 XAGE1AQ9HD64 81 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 NDUFA12Q9UI09 145 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 KIF25-AS1Q9Y6Z4 181 aa3.84□□□□□ -1.79
CD44-236ENST00000533222 HCG22E2RYF7 251 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 M0R1W7 72 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 LY6HO94772 140 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 SAA2P0DJI9 122 aaPredicted RBP3.83□□□□□ -1.8
CD44-236ENST00000533222 CRIP1P50238 77 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 FAM74A4Q5TZK3 123 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 ZNF843Q8N446 348 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 COX14Q96I36 57 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 LRRK1Q38SD2 2015 aa3.83□□□□□ -1.8
CD44-236ENST00000533222 LOC110117498A0A087WWA1 95 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 A0A087WZ39 114 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 IGHV1-18A0A0C4DH31 117 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 A0A0J9YXV3 536 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 PSCAO43653 123 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 TSPEAR-AS2P59090 65 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 ERHP84090 104 aaKnown RBP3.82□□□□□ -1.8
CD44-236ENST00000533222 C15orf32Q32M92 178 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 C6orf99Q4VX62 202 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 C9orf116Q5BN46 136 aaPredicted RBP3.82□□□□□ -1.8
CD44-236ENST00000533222 PRNTQ86SH4 94 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 C17orf82Q86X59 251 aaPredicted RBP3.82□□□□□ -1.8
CD44-236ENST00000533222 CDC42SE2Q9NRR3 84 aa3.82□□□□□ -1.8
CD44-236ENST00000533222 H7C2G1 150 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 LINC01547P58512 204 aaPredicted RBP3.81□□□□□ -1.8
CD44-236ENST00000533222 FXYD7P58549 80 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 NREPQ16612 68 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 IGFL3Q6UXB1 125 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 Q9BRP9 147 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 LINC00467Q9BRT7 94 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 DSCAMO60469 2012 aa3.81□□□□□ -1.8
CD44-236ENST00000533222 TET2Q6N021 2002 aaPredicted RBP3.81□□□□□ -1.8
CD44-236ENST00000533222 USF3Q68DE3 2245 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 IGLV5-45A0A087WSX0 123 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 TRBV6-5A0A0K0K1A5 114 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 LMO4P61968 165 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 KRTAP24-1Q3LI83 254 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 ENHOQ6UWT2 76 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 PRSS33Q8NF86 280 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 ZNF702PQ9H963 129 aa3.8□□□□□ -1.8
CD44-236ENST00000533222 SPAG17Q6Q759 2223 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 INTS1Q8N201 2190 aaKnown RBP3.79□□□□□ -1.8
CD44-236ENST00000533222 IGLV3-9A0A075B6K5 115 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 IGKV1D-37A0A075B6S9 117 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 C12orf77C9JDV5 145 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 NDUFA1O15239 70 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 LHBP01229 141 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 B3GALT5-AS1P59052 145 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 C9orf66Q5T8R8 295 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 SPANXA2-OT1Q8N9U9 137 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 C1orf64Q8NEQ6 169 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 OCR1Q9BZK8 76 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 LENEPQ9Y5L5 61 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 SNURFQ9Y675 71 aa3.79□□□□□ -1.8
CD44-236ENST00000533222 IGLV3-12A0A075B6K2 115 aa3.78□□□□□ -1.8
CD44-236ENST00000533222 IGKV1-16P04430 117 aa3.78□□□□□ -1.8
CD44-236ENST00000533222 LINC00242Q5T6M2 205 aa3.78□□□□□ -1.8
CD44-236ENST00000533222 ZNF625Q96I27 306 aaPredicted RBP3.78□□□□□ -1.8
CD44-236ENST00000533222 NDUFA4L2Q9NRX3 87 aa3.78□□□□□ -1.8
CD44-236ENST00000533222 ORMDL1Q9P0S3 153 aa3.78□□□□□ -1.8
CD44-236ENST00000533222 NOTCH4Q99466 2003 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 IGHV3-16A0A0C4DH30 117 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 C5orf67F2Z3F1 127 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 CHKB-CPT1BH3BT56 60 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 TSHBP01222 138 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 IGLV3-19P01714 112 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 CLPSP04118 112 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 IGHV3-30-3P0DP02 117 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 IGHV4-31P0DP07 118 aa3.77□□□□□ -1.81
CD44-236ENST00000533222 POLR2KP53803 58 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms