RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	IGKV1D-12	P01611	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV1-69	P01742	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	RPL28	P46779	137 aa	Known RBP	3.9	□□□□□ -1.79
CD44-231	ENST00000531110	KRTAP10-5	P60370	271 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	LMO4	P61968	165 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	MIA	Q16674	131 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	SFTA2	Q6UW10	78 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	GPHB5	Q86YW7	130 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	LINC00269	Q8N2A0	174 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110		Q8N6K4	173 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110		Q8NBF4	154 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	TMEM14B	Q9NUH8	114 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	PRRC2A	P48634	2157 aa	Known RBP	3.89	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV4-30-2	A0A087WSY4	118 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110		A0A087WZ39	114 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	C3orf84	H3BNL1	204 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110		M0R3E3	92 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	CD24	P25063	80 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	LINC00313	P59037	77 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	ELOF1	P60002	83 aa	Known RBP	3.89	□□□□□ -1.79
CD44-231	ENST00000531110	PIGY	Q3MUY2	71 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	LYZL1	Q6UWQ5	148 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	FAM19A3	Q7Z5A8	133 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	SMIM14	Q96QK8	99 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	SMIM2	Q9BVW6	85 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	UBL5	Q9BZL1	73 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	LINC00846	Q9NV44	126 aa		3.89	□□□□□ -1.79
CD44-231	ENST00000531110	IGLV4-69	A0A075B6H9	119 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV1-27	A0A075B6S5	117 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	PRM2	P04554	102 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	PDE6G	P18545	87 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	LINC00337	Q8N6G1	96 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	TMEM254	Q8TBM7	123 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	KLF14	Q8TD94	323 aa	Predicted RBP	3.88	□□□□□ -1.79
CD44-231	ENST00000531110	BPESC1	Q9GZL8	116 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	CDC42SE1	Q9NRR8	79 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	C22orf24	Q9Y442	160 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	NACA	E9PAV3	2078 aa		3.88	□□□□□ -1.79
CD44-231	ENST00000531110	CABIN1	Q9Y6J0	2220 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	NOTCH3	Q9UM47	2321 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	TRBV6-8	A0A0A6YYG3	113 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	TRAV22	A0A0B4J277	110 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV3-20	A0A0C4DH32	117 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	LOC101927531	A0A1B0GV80	90 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	TRBV12-3	P01733	135 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	TRGV3	P03979	118 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	RPL27A	P46776	148 aa	Known RBP	3.87	□□□□□ -1.79
CD44-231	ENST00000531110	PRCD	Q00LT1	54 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	MYO7B	Q6PIF6	2116 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	PATE2	Q6UY27	113 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110		Q8N377	158 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	MED12	Q93074	2177 aa		3.87	□□□□□ -1.79
CD44-231	ENST00000531110	MUC22	E2RYF6	1773 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-231	ENST00000531110		A0A087WVE0	104 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV6-1	A0A0B4J1U7	121 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV1-8	A0A0C4DH67	115 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	LCE6A	A0A183	80 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	FAM27B	Q5VT28	67 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	C11orf71	Q6IPW1	123 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	SCX	Q7RTU7	201 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	C11orf72	Q8NBR9	251 aa		3.86	□□□□□ -1.79
CD44-231	ENST00000531110	ITLN2	Q8WWU7	325 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-231	ENST00000531110	MRPL36	Q9P0J6	103 aa	Known RBP	3.86	□□□□□ -1.79
CD44-231	ENST00000531110	COL4A5	P29400	1685 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV3D-7	A0A0C4DH55	119 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	C16orf90	A8MZG2	172 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	NDUFB1	O75438	58 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	CTSG	P08311	255 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	DEFB114	Q30KQ6	69 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	FAM229B	Q4G0N7	80 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	C2orf66	Q6UXQ4	117 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	RMI2	Q96E14	147 aa		3.85	□□□□□ -1.79
CD44-231	ENST00000531110	FER1L5	A0AVI2	2057 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	TRAV23DV6	A0A075B6W5	121 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV1OR2-108	A0A075B7D4	117 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV3-38	A0A0C4DH36	116 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110		Q5VV11	94 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	SOSTDC1	Q6X4U4	206 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	C14orf178	Q8N769	122 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-231	ENST00000531110	KLHL30-AS1	Q8NEE0	82 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	CLEC2B	Q92478	149 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	LINC00167	Q96N53	147 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	XAGE1A	Q9HD64	81 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	NDUFA12	Q9UI09	145 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	KIF25-AS1	Q9Y6Z4	181 aa		3.84	□□□□□ -1.79
CD44-231	ENST00000531110	HCG22	E2RYF7	251 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110		M0R1W7	72 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	LY6H	O94772	140 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	SAA2	P0DJI9	122 aa	Predicted RBP	3.83	□□□□□ -1.8
CD44-231	ENST00000531110	CRIP1	P50238	77 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	DSCR10	P59022	87 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	FAM74A4	Q5TZK3	123 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	COX14	Q96I36	57 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	LRRK1	Q38SD2	2015 aa		3.83	□□□□□ -1.8
CD44-231	ENST00000531110	IGLV4-3	A0A075B6K6	122 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	LOC110117498	A0A087WWA1	95 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	IGHV1-18	A0A0C4DH31	117 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110		A0A0J9YXV3	536 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	PSCA	O43653	123 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	TSPEAR-AS2	P59090	65 aa		3.82	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 182 ms