RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 HIGD1CA8MV81 97 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 A8MWL6 223 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 DPM2O94777 84 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 TRGC2P03986 189 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 RNASE4P34096 147 aaKnown RBP3.04□□□□□ -1.92
CD44-226ENST00000527889 APOC4P55056 127 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 FXYD7P58549 80 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 DEFB131AP59861 70 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 MUC21Q5SSG8 566 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 NEGR1Q7Z3B1 354 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 ZFAND2AQ8N6M9 145 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 FER1L6-AS1Q8NA97 138 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 NUP35Q8NFH5 326 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 OR4B1Q8NGF8 309 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 TSKUQ8WUA8 353 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 GTSF1Q8WW33 167 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 RASL10AQ92737 203 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 TMEM101Q96IK0 257 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 PGLYRP4Q96LB8 373 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 IMMP2LQ96T52 175 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 PYGO2Q9BRQ0 406 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 PRADC1Q9BSG0 188 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 SPANXDQ9BXN6 97 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 LAMTOR3Q9UHA4 124 aa3.04□□□□□ -1.92
CD44-226ENST00000527889 ZNF256Q9Y2P7 627 aaPredicted RBP3.04□□□□□ -1.92
CD44-226ENST00000527889 HERC1Q15751 4861 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAV12-2A0A075B6T6 113 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAV9-1A0A075B6T8 112 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAV2A0A0B4J234 112 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAV8-4A0A0B4J246 113 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAV12-3A0A0B4J271 114 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 C7orf71A4D174 169 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 RBMY1BA6NDE4 496 aaKnown RBP3.03□□□□□ -1.92
CD44-226ENST00000527889 RBMY1EA6NEQ0 496 aaKnown RBP3.03□□□□□ -1.92
CD44-226ENST00000527889 DUSP14O95147 198 aaKnown RBP3.03□□□□□ -1.92
CD44-226ENST00000527889 IGLV1-51P01701 117 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 GPX1P07203 203 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 RBMY1DP0C7P1 496 aaKnown RBP3.03□□□□□ -1.92
CD44-226ENST00000527889 ARMS2P0C7Q2 107 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TSPOP30536 169 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 SPINK13Q1W4C9 94 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 KIAA1644Q3SXP7 199 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 EBLN2Q6P2I7 272 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 FOXI2Q6ZQN5 318 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRPT1Q86TN4 253 aaKnown RBP3.03□□□□□ -1.92
CD44-226ENST00000527889 ZNF664Q8N3J9 261 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 ANKRD29Q8N6D5 301 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 FRZBQ92765 325 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 FAM19A4Q96LR4 140 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 MIEN1Q9BRT3 115 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 VAMP8Q9BV40 100 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 WFDC10AQ9H1F0 79 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 TRAPPC1Q9Y5R8 145 aa3.03□□□□□ -1.92
CD44-226ENST00000527889 IGKV3D-20A0A0C4DH25 116 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 A0A1B0GUT8 65 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 A0A1B0GWB2 263 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 KLLNB2CW77 178 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 H3BVH4 76 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 CD7P09564 240 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 TRGC1P0CF51 173 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 HLA-DRB4P13762 266 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 CRISP2P16562 243 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 GFI1BQ5VTD9 330 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 LYZL1Q6UWQ5 148 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 AMTNQ6UX39 209 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 SCGB1D4Q6XE38 83 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 TMEM136Q6ZRR5 245 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 C11orf45Q8TAV5 145 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 C9orf85Q96MD7 179 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 TIMM8BQ9Y5J9 83 aaPredicted RBP3.02□□□□□ -1.93
CD44-226ENST00000527889 LENEPQ9Y5L5 61 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 HLA-DRB4X5D2U9 266 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 ABCA13Q86UQ4 5058 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 COL7A1Q02388 2944 aa3.02□□□□□ -1.93
CD44-226ENST00000527889 TRAV26-2A0A0B4J265 109 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 TRAV21A0A0B4J279 112 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 A0A1B0GXF2 115 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 A8MTW9 85 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 H3BMM0 161 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 GNRH2O43555 120 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BKO60814 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 PRM2P04554 102 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BJP06899 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 IGLC6P0CF74 106 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 RBMY1A1P0DJD3 496 aaKnown RBP3.01□□□□□ -1.93
CD44-226ENST00000527889 RBMY1CP0DJD4 496 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BOP23527 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BBP33778 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 CTRLP40313 264 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 FOXA3P55318 350 aaPredicted RBP3.01□□□□□ -1.93
CD44-226ENST00000527889 NDUFA6P56556 154 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BDP58876 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST1H2BCP62807 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HBBP68871 147 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 RBMY1FQ15415 496 aaKnown RBP3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST2H2BEQ16778 126 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.01□□□□□ -1.93
CD44-226ENST00000527889 C9orf66Q5T8R8 295 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 Q6AWC8 147 aa3.01□□□□□ -1.93
CD44-226ENST00000527889 ATP5L2Q7Z4Y8 100 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms