RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 C3orf85A0A1B0GTC6 90 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 SMIM31A0A1B0GVY4 71 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 E7EQL1 145 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 TCL1BO95988 128 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 CD3DP04234 171 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 CRYGAP11844 174 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 SMIM11AP58511 58 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 FXYD6P3P58550 94 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 DEFB113Q30KQ7 82 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 C10orf128Q5T292 105 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 OTOSQ8NHW6 89 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 TRAPPC1Q9Y5R8 145 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 ICOSQ9Y6W8 199 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 U3KQK5 164 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 USF3Q68DE3 2245 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 MCRIP1C9JLW8 97 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 TMEM262E9PQX1 116 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 LHBP01229 141 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 PMP2P02689 132 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 MSMBP08118 114 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 TPT1P13693 172 aaKnown RBP2.97□□□□□ -1.93
CD44-220ENST00000525688 ZNF14P17017 642 aaPredicted RBP2.97□□□□□ -1.93
CD44-220ENST00000525688 CDK5R1Q15078 307 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 C6orf52Q5T4I8 152 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 FAM27BQ5VT28 67 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 FAM216BQ8N7L0 139 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 OR4X2Q8NGF9 303 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 Q96M85 177 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 CCL19Q99731 98 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 SMDT1Q9H4I9 107 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 MED9Q9NWA0 146 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 MXRA5Q9NR99 2828 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 TLN2Q9Y4G6 2542 aa2.97□□□□□ -1.93
CD44-220ENST00000525688 PLXNB1O43157 2135 aa2.96□□□□□ -1.93
CD44-220ENST00000525688 HEATR1Q9H583 2144 aaKnown RBP2.96□□□□□ -1.93
CD44-220ENST00000525688 RTTNQ86VV8 2226 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 IGKV1OR2-108A0A075B7D4 117 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 IGHV3-73A0A0B4J1V6 119 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 C7orf66A4D0T2 115 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 A8MUU9 505 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 SDCBPO00560 298 aaPredicted RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 YPEL1O60688 119 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 UBL3O95164 117 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 RBP4P02753 201 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 IGLC1P0CG04 106 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 BLCAPP62952 87 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 SUPT4H1P63272 117 aaKnown RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 MRPS36P82909 103 aaKnown RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 ZNF846Q147U1 533 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 C2orf91Q6ZV80 131 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 DYNAPQ8N1N2 210 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 SPANXA2-OT1Q8N9U9 137 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 MUC7Q8TAX7 377 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 LSM10Q969L4 123 aaKnown RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 RAB37Q96AX2 223 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 MRPS24Q96EL2 167 aaKnown RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 AQP10Q96PS8 301 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 VAMP8Q9BV40 100 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 ANK3Q12955 4377 aaKnown RBP2.96□□□□□ -1.94
CD44-220ENST00000525688 DNHD1Q96M86 4753 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 CSPG4Q6UVK1 2322 aa2.96□□□□□ -1.94
CD44-220ENST00000525688 SVEP1Q4LDE5 3571 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 MED13LQ71F56 2210 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 MDFIC2A0A1B0GVS7 189 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 OOSP1A8MZH6 123 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 M0R2P5 195 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 ZNF737O75373 536 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 TRACP01848 142 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 SLC25A4P12235 298 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 FABP4P15090 132 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 CD24P25063 80 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 XCL1P47992 114 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 KHDC3LQ587J8 217 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 LYZL2Q7Z4W2 148 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 OR5AS1Q8N127 324 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 Q8NDZ9 215 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 IMMP2LQ96T52 175 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 AP4S1Q9Y587 144 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 LINC00312Q9Y6C7 94 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 ARFGEF3Q5TH69 2177 aa2.95□□□□□ -1.94
CD44-220ENST00000525688 IGKV1D-37A0A075B6S9 117 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 A0A096LNT2 108 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 A0A0B4J2C4 111 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 GNGT2O14610 69 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 HYPMO75409 117 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 SAA1P0DJI8 122 aaPredicted RBP2.94□□□□□ -1.94
CD44-220ENST00000525688 NFYAP23511 347 aaPredicted RBP2.94□□□□□ -1.94
CD44-220ENST00000525688 FUSP35637 526 aaKnown RBP eCLIP2.94□□□□□ -1.94
CD44-220ENST00000525688 MPV17P39210 176 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 RPL28P46779 137 aaKnown RBP2.94□□□□□ -1.94
CD44-220ENST00000525688 EFNA4P52798 201 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 PCBD1P61457 104 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 KRTAP11-1Q8IUC1 163 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 OR5AK2Q8NH90 309 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 CMC2Q9NRP2 79 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 TAS2R4Q9NYW5 299 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 LHFPL6Q9Y693 200 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 NAV3Q8IVL0 2385 aa2.94□□□□□ -1.94
CD44-220ENST00000525688 A0A096LNJ9 63 aa2.93□□□□□ -1.94
CD44-220ENST00000525688 LOC107986453A0A1B0GWG9 222 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms