RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 FCER1GP30273 86 aa11.13□□□□□ -0.63
LSM1-204ENST00000522515 AMTP48728 403 aa11.13□□□□□ -0.63
LSM1-204ENST00000522515 UPK3BQ9BT76 320 aa11.13□□□□□ -0.63
LSM1-204ENST00000522515 NXT2Q9NPJ8 142 aaKnown RBP11.13□□□□□ -0.63
LSM1-204ENST00000522515 TRAV8-6A0A0B4J262 113 aa11.12□□□□□ -0.63
LSM1-204ENST00000522515 PRSS3P2Q8NHM4 247 aa11.12□□□□□ -0.63
LSM1-204ENST00000522515 LINC00476Q8WZB0 136 aa11.12□□□□□ -0.63
LSM1-204ENST00000522515 CHCHD7Q9BUK0 85 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 LY6G6CO95867 125 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 ESDP10768 282 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 URB1-AS1Q96HZ7 61 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 CHCHD5Q9BSY4 110 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
LSM1-204ENST00000522515 SIVA1O15304 175 aa11.1□□□□□ -0.63
LSM1-204ENST00000522515 Q9H8V8 135 aa11.1□□□□□ -0.63
LSM1-204ENST00000522515 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.09□□□□□ -0.63
LSM1-204ENST00000522515 IGKV2-29A2NJV5 120 aaPredicted RBP11.09□□□□□ -0.63
LSM1-204ENST00000522515 NIT1Q86X76 327 aa11.09□□□□□ -0.63
LSM1-204ENST00000522515 Q8N3U1 123 aa11.09□□□□□ -0.63
LSM1-204ENST00000522515 VPS13DQ5THJ4 4388 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BKO60814 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BJP06899 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BOP23527 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BBP33778 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BDP58876 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BCP62807 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 Q0VG73 95 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 GAGE6Q13070 117 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST2H2BEQ16778 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.08□□□□□ -0.64
LSM1-204ENST00000522515 FA2HQ7L5A8 372 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BHQ93079 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BNQ99877 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 HIST1H2BMQ99879 126 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 DNAH1Q9P2D7 4330 aa11.08□□□□□ -0.64
LSM1-204ENST00000522515 LINC01546A6NGU7 62 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 TMEM262E9PQX1 116 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 K7EMI3 77 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 LINC00614P0C842 121 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 LAGE3Q14657 143 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 C1orf196B1AJZ1 125 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 UBE2L6O14933 153 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 DNAH10OSP0CZ25 163 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 ORMDL2Q53FV1 153 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 BAGE3Q86Y29 109 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 C20orf203Q8NBC4 194 aa11.07□□□□□ -0.64
LSM1-204ENST00000522515 RPL39P62891 51 aaKnown RBP11.06□□□□□ -0.64
LSM1-204ENST00000522515 MPV17L2Q567V2 206 aa11.06□□□□□ -0.64
LSM1-204ENST00000522515 RNASEKQ6P5S7 137 aaKnown RBP11.06□□□□□ -0.64
LSM1-204ENST00000522515 AP5S1Q9NUS5 200 aa11.06□□□□□ -0.64
LSM1-204ENST00000522515 A0A087WX48 190 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 IGHV3-30P01768 117 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 IGHV3-33P01772 117 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 IGHV3-30-3P0DP02 117 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 IGHV3-30-5P0DP03 117 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 RAB5BP61020 215 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 LINC01556Q5JQF7 62 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 Q8N976 141 aa11.05□□□□□ -0.64
LSM1-204ENST00000522515 ALMS1Q8TCU4 4167 aa11.04□□□□□ -0.64
LSM1-204ENST00000522515 H7C423 109 aa11.04□□□□□ -0.64
LSM1-204ENST00000522515 FGF6P10767 208 aa11.04□□□□□ -0.64
LSM1-204ENST00000522515 LCE6AA0A183 80 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 LINC00310P59036 64 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 RBX1P62877 108 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 SERF1AO75920 110 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 BTF3P20290 206 aaKnown RBP11.03□□□□□ -0.64
LSM1-204ENST00000522515 PKIAP61925 76 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 AMMECR1LQ6DCA0 310 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 C2orf66Q6UXQ4 117 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 TMEM18Q96B42 140 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 CHCHD1Q96BP2 118 aaKnown RBP11.03□□□□□ -0.64
LSM1-204ENST00000522515 TMA7Q9Y2S6 64 aaKnown RBP11.03□□□□□ -0.64
LSM1-204ENST00000522515 UBE2D4Q9Y2X8 147 aa11.03□□□□□ -0.64
LSM1-204ENST00000522515 IGLV4-60A0A075B6I1 120 aa11.02□□□□□ -0.65
LSM1-204ENST00000522515 A0A1B0GUV1 79 aa11.02□□□□□ -0.65
LSM1-204ENST00000522515 PMCHL1Q16048 86 aa11.02□□□□□ -0.65
LSM1-204ENST00000522515 MRPL52Q86TS9 123 aaKnown RBP11.02□□□□□ -0.65
LSM1-204ENST00000522515 A0A096LNJ9 63 aa11.01□□□□□ -0.65
LSM1-204ENST00000522515 NUPR1O60356 82 aa11.01□□□□□ -0.65
LSM1-204ENST00000522515 KRTAP1-5Q9BYS1 174 aa11.01□□□□□ -0.65
LSM1-204ENST00000522515 CYSLTR1Q9Y271 337 aa11.01□□□□□ -0.65
LSM1-204ENST00000522515 NBDYA0A0U1RRE5 68 aa11□□□□□ -0.65
LSM1-204ENST00000522515 M0R2N4 97 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 HSBP1O75506 76 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 ANGP03950 147 aaKnown RBP10.99□□□□□ -0.65
LSM1-204ENST00000522515 ZNF25P17030 456 aaPredicted RBP10.99□□□□□ -0.65
LSM1-204ENST00000522515 G0S2P27469 103 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 TOMM6Q96B49 74 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 TIMM21Q9BVV7 248 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 KLK12Q9UKR0 248 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 TRAV9-2A0A087WT02 112 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 NDUFA6P56556 154 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 DGAT2L7PQ6IED9 249 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 OR5A1Q8NGJ0 315 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 TMEM101Q96IK0 257 aa10.99□□□□□ -0.65
LSM1-204ENST00000522515 SACSQ9NZJ4 4579 aa10.98□□□□□ -0.65
LSM1-204ENST00000522515 HBDP02042 147 aa10.98□□□□□ -0.65
LSM1-204ENST00000522515 SMAGPQ0VAQ4 97 aa10.98□□□□□ -0.65
LSM1-204ENST00000522515 FAM19A2Q8N3H0 131 aa10.98□□□□□ -0.65
LSM1-204ENST00000522515 FAM104AQ969W3 186 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms