RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 UBE2D2P62837 147 aa13.06□□□□□ -0.32
CCHCR1-228ENST00000509552 SFTA2Q6UW10 78 aa13.06□□□□□ -0.32
CCHCR1-228ENST00000509552 TEX15Q9BXT5 2789 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 TEX29Q8N6K0 151 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 C11orf72Q8NBR9 251 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 DNAJC30Q96LL9 226 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 ABCA12Q86UK0 2595 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 MRPS36P82909 103 aaKnown RBP13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 Q6ZSN1 163 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 C10orf126Q8N4M7 172 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 PRO1854Q9UHT4 67 aa13.05□□□□□ -0.32
CCHCR1-228ENST00000509552 TMEM238C9JI98 176 aa13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 TIMM21Q9BVV7 248 aa13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 SPANXA1Q9NS26 97 aa13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 MYO9AB2RTY4 2548 aa13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 CEMP1Q6PRD7 247 aaPredicted RBP13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 Q6ZSV7 163 aa13.04□□□□□ -0.32
CCHCR1-228ENST00000509552 IGHV3-53P01767 116 aa13.03□□□□□ -0.32
CCHCR1-228ENST00000509552 BEAN1Q3B7T3 259 aa13.03□□□□□ -0.32
CCHCR1-228ENST00000509552 IGHV3-30-3P0DP02 117 aa13.02□□□□□ -0.32
CCHCR1-228ENST00000509552 FAM104AQ969W3 186 aa13.02□□□□□ -0.32
CCHCR1-228ENST00000509552 CLUHP3Q96NS8 147 aa13.02□□□□□ -0.32
CCHCR1-228ENST00000509552 CHCHD7Q9BUK0 85 aa13.02□□□□□ -0.32
CCHCR1-228ENST00000509552 Q9UF83 564 aa13.02□□□□□ -0.32
CCHCR1-228ENST00000509552 TRBV20-1A0A075B6N2 111 aa13.02□□□□□ -0.33
CCHCR1-228ENST00000509552 TRAV25A0A0B4J276 109 aa13.02□□□□□ -0.33
CCHCR1-228ENST00000509552 HIST2H2BDQ6DRA6 164 aa13.02□□□□□ -0.33
CCHCR1-228ENST00000509552 KRTAP1-3Q8IUG1 177 aa13.02□□□□□ -0.33
CCHCR1-228ENST00000509552 A4D1N5 150 aa13.01□□□□□ -0.33
CCHCR1-228ENST00000509552 RS1O15537 224 aa13.01□□□□□ -0.33
CCHCR1-228ENST00000509552 STHQ8IWL8 128 aa13.01□□□□□ -0.33
CCHCR1-228ENST00000509552 UBE2D4Q9Y2X8 147 aa13.01□□□□□ -0.33
CCHCR1-228ENST00000509552 XCL2Q9UBD3 114 aa13.01□□□□□ -0.33
CCHCR1-228ENST00000509552 TINCRA0A1B0GVN0 87 aa13□□□□□ -0.33
CCHCR1-228ENST00000509552 RNASE13Q5GAN3 156 aaKnown RBP13□□□□□ -0.33
CCHCR1-228ENST00000509552 MUSTN1Q8IVN3 82 aa13□□□□□ -0.33
CCHCR1-228ENST00000509552 NACAE9PAV3 2078 aa13□□□□□ -0.33
CCHCR1-228ENST00000509552 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13□□□□□ -0.33
CCHCR1-228ENST00000509552 A0A0J9YXY3 114 aa13□□□□□ -0.33
CCHCR1-228ENST00000509552 IGKV2-29A2NJV5 120 aaPredicted RBP13□□□□□ -0.33
CCHCR1-228ENST00000509552 SCGB1C2P0DMR2 95 aa13□□□□□ -0.33
CCHCR1-228ENST00000509552 TSSC4Q9Y5U2 329 aaPredicted RBP13□□□□□ -0.33
CCHCR1-228ENST00000509552 IGHV1-58A0A0C4DH39 117 aa12.99□□□□□ -0.33
CCHCR1-228ENST00000509552 DNAJC9-AS1A6NH13 148 aa12.99□□□□□ -0.33
CCHCR1-228ENST00000509552 ODF3L2Q3SX64 289 aa12.99□□□□□ -0.33
CCHCR1-228ENST00000509552 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.99□□□□□ -0.33
CCHCR1-228ENST00000509552 ATP6V0E2Q8NHE4 81 aa12.99□□□□□ -0.33
CCHCR1-228ENST00000509552 A0A0B4J2C4 111 aa12.98□□□□□ -0.33
CCHCR1-228ENST00000509552 IGHV3-38A0A0C4DH36 116 aa12.98□□□□□ -0.33
CCHCR1-228ENST00000509552 TCL1BO95988 128 aa12.98□□□□□ -0.33
CCHCR1-228ENST00000509552 ZNF418Q8TF45 676 aaPredicted RBP12.98□□□□□ -0.33
CCHCR1-228ENST00000509552 TRAV8-3A0A0A6YYJ7 113 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 A0A1W2PRX2 142 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 GAGE12HA6NDE8 117 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 C1QTNF4Q9BXJ3 329 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 IGHV3OR16-12A0A075B7B8 117 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 AZU1P20160 251 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 SMCPP49901 116 aaPredicted RBP12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 C11orf44Q8N8P7 122 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 SIGMAR1Q99720 223 aa12.97□□□□□ -0.33
CCHCR1-228ENST00000509552 CCL24O00175 119 aa12.96□□□□□ -0.33
CCHCR1-228ENST00000509552 Q6ZUT4 128 aa12.96□□□□□ -0.33
CCHCR1-228ENST00000509552 TMEM263Q8WUH6 116 aaKnown RBP12.96□□□□□ -0.33
CCHCR1-228ENST00000509552 GEMIN7Q9H840 131 aaKnown RBP12.96□□□□□ -0.33
CCHCR1-228ENST00000509552 ERG28Q9UKR5 140 aa12.96□□□□□ -0.33
CCHCR1-228ENST00000509552 FHL3Q13643 280 aa12.96□□□□□ -0.34
CCHCR1-228ENST00000509552 ADARB2-AS1A8MUL3 147 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 IGHV3-33P01772 117 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 VSIG2Q96IQ7 327 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 NDUFA12Q9UI09 145 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 FOXI1Q12951 378 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 DGAT2L7PQ6IED9 249 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 C1orf158Q8N1D5 194 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 WFDC11Q8NEX6 87 aa12.95□□□□□ -0.34
CCHCR1-228ENST00000509552 TRGV1A0A0A0MS02 117 aa12.94□□□□□ -0.34
CCHCR1-228ENST00000509552 INSL3P51460 131 aa12.94□□□□□ -0.34
CCHCR1-228ENST00000509552 SPATA25Q9BR10 227 aa12.94□□□□□ -0.34
CCHCR1-228ENST00000509552 SPINK8P0C7L1 97 aa12.94□□□□□ -0.34
CCHCR1-228ENST00000509552 TLN2Q9Y4G6 2542 aa12.93□□□□□ -0.34
CCHCR1-228ENST00000509552 H7C2G1 150 aa12.93□□□□□ -0.34
CCHCR1-228ENST00000509552 EIF4EBP3O60516 100 aaPredicted RBP12.93□□□□□ -0.34
CCHCR1-228ENST00000509552 PRSS2P07478 247 aa12.93□□□□□ -0.34
CCHCR1-228ENST00000509552 GTSF1LQ9H1H1 148 aa12.93□□□□□ -0.34
CCHCR1-228ENST00000509552 Q1RN00 199 aa12.92□□□□□ -0.34
CCHCR1-228ENST00000509552 IL17DQ8TAD2 202 aa12.92□□□□□ -0.34
CCHCR1-228ENST00000509552 LITAFQ99732 161 aa12.92□□□□□ -0.34
CCHCR1-228ENST00000509552 SPANXDQ9BXN6 97 aa12.91□□□□□ -0.34
CCHCR1-228ENST00000509552 SPANXCQ9NY87 97 aa12.91□□□□□ -0.34
CCHCR1-228ENST00000509552 ESM1Q9NQ30 184 aa12.91□□□□□ -0.34
CCHCR1-228ENST00000509552 APCP25054 2843 aa12.91□□□□□ -0.34
CCHCR1-228ENST00000509552 AKAP9Q99996 3911 aa12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 TIRAPP58753 221 aa12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 RPL36AP83881 106 aaKnown RBP12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 TEN1Q86WV5 123 aa12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 RPL36ALQ969Q0 106 aaKnown RBP12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 SBSPONQ8IVN8 264 aa12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 CITED2Q99967 270 aaPredicted RBP12.9□□□□□ -0.34
CCHCR1-228ENST00000509552 CHD6Q8TD26 2715 aa12.9□□□□□ -0.35
CCHCR1-228ENST00000509552 EPG5Q9HCE0 2579 aa12.9□□□□□ -0.35
CCHCR1-228ENST00000509552 CMC4P56277 68 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms