RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SPINK13Q1W4C9 94 aa11.88□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 PAPPA-AS1Q5QFB9 102 aa11.88□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 ZNRF2Q8NHG8 242 aa11.88□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 IGHV1OR15-1A0A075B7D0 117 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 NHLRC4P0CG21 123 aaPredicted RBP11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 SYNJ2BPP57105 145 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 UBE2D1P51668 147 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 TSPEAR-AS2P59090 65 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 ZNF876PQ49A33 203 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 SCGB1D4Q6XE38 83 aa11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 ZNF256Q9Y2P7 627 aaPredicted RBP11.87□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 A0A0J9YY99 117 aa11.86□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 LY6G6DO95868 133 aa11.86□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 ZNF56Q15929 161 aa11.86□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 DUX5Q96PT3 197 aa11.86□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 P0DMU3 169 aa11.85□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 FAM231AP0DMU4 169 aa11.85□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 FAM231CP0DMU5 169 aa11.85□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 HERVK_113P61574 105 aa11.85□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 RNF152Q8N8N0 203 aa11.85□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 SRSF9Q13242 221 aaKnown RBP eCLIP11.84□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 NSUN5P1Q3KNT7 163 aa11.84□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 OPRPNQ99935 248 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 SORL1Q92673 2214 aa11.84□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 AMELXQ99217 191 aa11.84□□□□□ -0.51
MSH5-SAPCD1-208ENST00000498473 FHL3Q13643 280 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 RHOHQ15669 191 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 TRPT1Q86TN4 253 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 CITED1Q99966 193 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 TMEM262E9PQX1 116 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 RHODO00212 210 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 RBMY1A1P0DJD3 496 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 RBMY1CP0DJD4 496 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 HOXD3P31249 432 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 RBMY1FQ15415 496 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 TMEM170BQ5T4T1 132 aa11.83□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 CFAP126Q5VTH2 177 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 NFE4Q86UQ8 179 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 PPDPFLQ8WWR9 84 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 ZNF702PQ9H963 129 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 J3QLI3 93 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 ELANEP08246 267 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 VPREB3Q9UKI3 123 aa11.82□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 INAFM1C9JVW0 142 aa11.81□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 C20orf203Q8NBC4 194 aa11.81□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 IGHV3-30P01768 117 aa11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 IGHV3-30-5P0DP03 117 aa11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 NDUFV3P56181 108 aaKnown RBP11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 SLC25A29Q8N8R3 303 aa11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 UBE2E2Q96LR5 201 aa11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 FSHBP01225 129 aa11.8□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 J3QQQ9 107 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 Q6YL49 198 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 TRGV11A0A075B6L2 103 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 TMEM223A0PJW6 202 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 I3L3M4 83 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 C5orf47Q569G3 176 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 NDUFA11Q86Y39 141 aa11.79□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 KNCNA6PVL3 124 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 UBE2D3P61077 147 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 UBE2D2P62837 147 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 C18orf65Q6ZTR6 163 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 ATRQ13535 2644 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 CCDC179H3BU77 68 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 SMCPP49901 116 aaPredicted RBP11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 Q6Q795 121 aa11.78□□□□□ -0.52
MSH5-SAPCD1-208ENST00000498473 IGLV4-3A0A075B6K6 122 aa11.77□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 CFC1BP0CG36 223 aa11.77□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 CFC1P0CG37 223 aa11.77□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 TMEM126AQ9H061 195 aa11.77□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 A8MTW9 85 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 LEPROTO15243 131 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 ZNF22P17026 224 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 GAGE2BQ13066 116 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 GAGE2EQ4V326 116 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 TEN1Q86WV5 123 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 DLX4Q92988 240 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 FAM104AQ969W3 186 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 EDA2RQ9HAV5 297 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 GAGE2DQ9UEU5 116 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 RBMY1BA6NDE4 496 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 RBMY1EA6NEQ0 496 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 RBMY1DP0C7P1 496 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 LGALS3P17931 250 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 SLURP1P55000 103 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PROK1P58294 105 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 SFTA2Q6UW10 78 aa11.76□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 NACAE9PAV3 2078 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 IFITM1P13164 125 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 C2CD3Q4AC94 2353 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 A0A0J9YXV3 536 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PRM2P04554 102 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 DEFB131AP59861 70 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 DEFB136Q30KP8 78 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 PTH2Q96A98 100 aa11.75□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 IGHV3-73A0A0B4J1V6 119 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 LOC107984156A0A0G2JMH3 177 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 TTC32Q5I0X7 151 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 ARL17AQ8IVW1 177 aa11.74□□□□□ -0.53
MSH5-SAPCD1-208ENST00000498473 CARD19Q96LW7 228 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms