RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FAM24AA6NFZ4 105 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 S100A1P23297 94 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 S100PP25815 95 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 GCHFRP30047 84 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 CCL18P55774 89 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 ATP5EP56381 51 aaPredicted RBP0.88□□□□□ -2.27
UPF3B-203ENST00000478840 ARAP2Q8WZ64 1704 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 NAV3Q8IVL0 2385 aa0.88□□□□□ -2.27
UPF3B-203ENST00000478840 UBE2L5PA0A1B0GUS4 154 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 OOSP1A8MZH6 123 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 PIN1P1O15428 100 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 UBE2L3P68036 154 aaKnown RBP0.87□□□□□ -2.27
UPF3B-203ENST00000478840 KRTAP5-10Q6L8G5 202 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 SVBPQ8N300 66 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 MYOZ3Q8TDC0 251 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 MAPKBP1O60336 1514 aa0.87□□□□□ -2.27
UPF3B-203ENST00000478840 RIMS1Q86UR5 1692 aaKnown RBP0.86□□□□□ -2.27
UPF3B-203ENST00000478840 TRAV1-2A0A0B4J238 106 aa0.86□□□□□ -2.27
UPF3B-203ENST00000478840 CGREF1Q99674 301 aa0.86□□□□□ -2.27
UPF3B-203ENST00000478840 MGST2Q99735 147 aa0.86□□□□□ -2.27
UPF3B-203ENST00000478840 DOCK1Q14185 1865 aa0.86□□□□□ -2.27
UPF3B-203ENST00000478840 MYO7AQ13402 2215 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 APCP25054 2843 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 TRBV7-3A0A075B6L6 115 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 DCDP81605 110 aaKnown RBP0.85□□□□□ -2.27
UPF3B-203ENST00000478840 SPAG11BQ08648 103 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 SPAG11AQ6PDA7 123 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 SMIM4Q8WVI0 70 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 DOCK11Q5JSL3 2073 aa0.85□□□□□ -2.27
UPF3B-203ENST00000478840 ZMYM4Q5VZL5 1548 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 PRDM2Q13029 1718 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 LOC285095A0A1B0GVY8 99 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 C20orf202A1L168 122 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 PRH1P02810 166 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 IFITM1P13164 125 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 GTF2H5Q6ZYL4 71 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 DPH3P1Q9H4G8 78 aa0.84□□□□□ -2.27
UPF3B-203ENST00000478840 GOLGA3Q08378 1498 aa0.84□□□□□ -2.28
UPF3B-203ENST00000478840 CADP27708 2225 aa0.83□□□□□ -2.28
UPF3B-203ENST00000478840 TCEAL7Q9BRU2 100 aa0.83□□□□□ -2.28
UPF3B-203ENST00000478840 DYNLRB1Q9NP97 96 aa0.83□□□□□ -2.28
UPF3B-203ENST00000478840 IFT172Q9UG01 1749 aa0.83□□□□□ -2.28
UPF3B-203ENST00000478840 ROBO1Q9Y6N7 1651 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 PI4KAP42356 2102 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 MYH8P13535 1937 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 H3BQ15 152 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 M0R135 149 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 NMBP08949 121 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 V9GYH0 126 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 UNC13BO14795 1591 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 SHROOM2Q13796 1616 aa0.82□□□□□ -2.28
UPF3B-203ENST00000478840 MRC1P22897 1456 aa0.81□□□□□ -2.28
UPF3B-203ENST00000478840 DOCK2Q92608 1830 aa0.81□□□□□ -2.28
UPF3B-203ENST00000478840 CFAP126Q5VTH2 177 aa0.81□□□□□ -2.28
UPF3B-203ENST00000478840 NDUFA4L2Q9NRX3 87 aa0.81□□□□□ -2.28
UPF3B-203ENST00000478840 C10orf71Q711Q0 1435 aa0.81□□□□□ -2.28
UPF3B-203ENST00000478840 KRTAP2-3P0C7H8 128 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 COX6A2Q02221 97 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 COX17Q14061 63 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 AMELXQ99217 191 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 SMR3AQ99954 134 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 KRTAP2-4Q9BYR9 128 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 KRTAP2-1Q9BYU5 128 aa0.8□□□□□ -2.28
UPF3B-203ENST00000478840 CTXND1A0A1B0GTU2 59 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 G3V318 75 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 UBE2DNLQ8IWF7 75 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 ZNF609O15014 1411 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 PZPP20742 1482 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 NRKQ7Z2Y5 1582 aa0.79□□□□□ -2.28
UPF3B-203ENST00000478840 BDP1A6H8Y1 2624 aa0.78□□□□□ -2.28
UPF3B-203ENST00000478840 F8VRH5 84 aa0.78□□□□□ -2.28
UPF3B-203ENST00000478840 UQCR11O14957 56 aa0.78□□□□□ -2.28
UPF3B-203ENST00000478840 HSD52Q0P140 79 aa0.78□□□□□ -2.28
UPF3B-203ENST00000478840 UQCR10Q9UDW1 63 aa0.78□□□□□ -2.28
UPF3B-203ENST00000478840 TENM3Q9P273 2699 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 APOC3P02656 99 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 SPINK6Q6UWN8 80 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 BAGE2Q86Y30 109 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 TSLPQ969D9 159 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 LINC00474Q9P2X8 69 aa0.77□□□□□ -2.29
UPF3B-203ENST00000478840 HMGN4O00479 90 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 SPINK8P0C7L1 97 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 GNG11P61952 73 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 TMEM170BQ5T4T1 132 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 FAM167A-AS1Q96KT0 104 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 NPVFQ9HCQ7 196 aa0.76□□□□□ -2.29
UPF3B-203ENST00000478840 SCAPERQ9BY12 1400 aa0.75□□□□□ -2.29
UPF3B-203ENST00000478840 NAP1L6A6NFF2 107 aa0.75□□□□□ -2.29
UPF3B-203ENST00000478840 TMEM262E9PQX1 116 aa0.75□□□□□ -2.29
UPF3B-203ENST00000478840 LINC01558Q9Y6Z2 57 aa0.75□□□□□ -2.29
UPF3B-203ENST00000478840 A0A0D9SFI3 127 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 IGLC7A0M8Q6 106 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 CHKB-CPT1BH3BT56 60 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 KRTDAPP60985 99 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 C14orf144Q96I85 54 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 C12orf57Q99622 126 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 CACNA1HO95180 2353 aa0.74□□□□□ -2.29
UPF3B-203ENST00000478840 TMEM218A2RU14 115 aa0.73□□□□□ -2.29
UPF3B-203ENST00000478840 S100A3P33764 101 aa0.73□□□□□ -2.29
UPF3B-203ENST00000478840 CACNA1EQ15878 2313 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms