RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 P01737 135 aa6.65□□□□□ -1.34
HDAC3-208ENST00000476739 OR5AL1P0C617 328 aa6.65□□□□□ -1.34
HDAC3-208ENST00000476739 SRIP30626 198 aa6.65□□□□□ -1.34
HDAC3-208ENST00000476739 ZFP2Q6ZN57 461 aa6.65□□□□□ -1.34
HDAC3-208ENST00000476739 KRTAP1-5Q9BYS1 174 aa6.65□□□□□ -1.34
HDAC3-208ENST00000476739 DNAH2Q9P225 4427 aa6.65□□□□□ -1.35
HDAC3-208ENST00000476739 NBDYA0A0U1RRE5 68 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 RTL8CO15255 209 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 RHOHQ15669 191 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 BAGE3Q86Y29 109 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 BORCS7Q96B45 105 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 PRADC1Q9BSG0 188 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 TPPP3Q9BW30 176 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 SPANXA1Q9NS26 97 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 MSRB1Q9NZV6 116 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 LY96Q9Y6Y9 160 aa6.64□□□□□ -1.35
HDAC3-208ENST00000476739 TRAV9-2A0A087WT02 112 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 GAGE12JA6NER3 117 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 LINC00694P0DN24 101 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 GAGE4Q13068 117 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 GAGE5Q13069 117 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 GAGE13Q4V321 117 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 SPANXN1Q5VSR9 72 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 LYZL1Q6UWQ5 148 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 FER1L6-AS1Q8NA97 138 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 GNB1LQ9BYB4 327 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 RPP21Q9H633 154 aaKnown RBP6.63□□□□□ -1.35
HDAC3-208ENST00000476739 ST20Q9HBF5 79 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 KIF25-AS1Q9Y6Z4 181 aa6.63□□□□□ -1.35
HDAC3-208ENST00000476739 H0Y8G0 127 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 RHODO00212 210 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 LINC00315P59091 139 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 WFDC10BQ8IUB3 73 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 OR5A1Q8NGJ0 315 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 GTSF1Q8WW33 167 aa6.62□□□□□ -1.35
HDAC3-208ENST00000476739 FAT2Q9NYQ8 4349 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 SIVA1O15304 175 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 SEC11AP67812 179 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 RASL11AQ6T310 242 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 FAM231DQ6ZW35 169 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 AP1S3Q96PC3 154 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 DNAH17Q9UFH2 4485 aa6.61□□□□□ -1.35
HDAC3-208ENST00000476739 NTF3P20783 257 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 EVI2AP22794 236 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 KRTDAPP60985 99 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 ZNF56Q15929 161 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 C1orf134Q5TEV5 83 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 ATP6V0E2Q8NHE4 81 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 SIGMAR1Q99720 223 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 BIRC6Q9NR09 4857 aa6.6□□□□□ -1.35
HDAC3-208ENST00000476739 A6NDN8 102 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 F2Z2F3 143 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 SERF1AO75920 110 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 HINT1P49773 126 aaPredicted RBP6.59□□□□□ -1.35
HDAC3-208ENST00000476739 TIRAPP58753 221 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 CACNG7P62955 275 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 SH2D6Q7Z4S9 175 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 C6orf223Q8N319 242 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 NEXN-AS1Q8NBZ9 246 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 OR10G8Q8NGN5 311 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 CNFNQ9BYD5 112 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 MRPL18Q9H0U6 180 aaKnown RBP6.59□□□□□ -1.35
HDAC3-208ENST00000476739 GTSF1LQ9H1H1 148 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 TNFRSF18Q9Y5U5 241 aa6.59□□□□□ -1.35
HDAC3-208ENST00000476739 GAGE10A6NGK3 116 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 PRSS29PA6NIE9 313 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 F5H697 171 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 HLA-DQA1P01909 254 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 MGPP08493 103 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 AMTP48728 403 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 FOXA3P55318 350 aaPredicted RBP6.58□□□□□ -1.36
HDAC3-208ENST00000476739 TWIST1Q15672 202 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 LELP1Q5T871 98 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 Q8N3U1 123 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 PGLYRP4Q96LB8 373 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 OSTCQ9NRP0 149 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 V9GYV3 84 aa6.58□□□□□ -1.36
HDAC3-208ENST00000476739 TRBV7-3A0A075B6L6 115 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 IGHV3-38A0A0C4DH36 116 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 TRBV10-1A0A0K0K1A3 114 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 A0A1B0GVY2 172 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 A8MWL6 223 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 DNAH10OSP0CZ25 163 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 PMCHP20382 165 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 UBE2D3P61077 147 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 UBE2D2P62837 147 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 TNP2Q05952 138 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 CT83Q5H943 113 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 TTC32Q5I0X7 151 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 SUMO4Q6EEV6 95 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 LINC00336Q6ZUF6 198 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 FA2HQ7L5A8 372 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 Q8N976 141 aa6.57□□□□□ -1.36
HDAC3-208ENST00000476739 M0QY20 66 aa6.56□□□□□ -1.36
HDAC3-208ENST00000476739 TAX1BP3O14907 124 aa6.56□□□□□ -1.36
HDAC3-208ENST00000476739 RPL36AP83881 106 aaKnown RBP6.56□□□□□ -1.36
HDAC3-208ENST00000476739 SLC25A34Q6PIV7 304 aa6.56□□□□□ -1.36
HDAC3-208ENST00000476739 TSKUQ8WUA8 353 aa6.56□□□□□ -1.36
HDAC3-208ENST00000476739 RPL36ALQ969Q0 106 aaKnown RBP6.56□□□□□ -1.36
HDAC3-208ENST00000476739 DPH3P1Q9H4G8 78 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms