RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 NQO2P16083 231 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 CBX5P45973 191 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 SERPINB10P48595 397 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 RAB5CP51148 216 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 ZNF90Q03938 601 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 FLOT2Q14254 428 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 FAM229BQ4G0N7 80 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 C1orf194Q5T5A4 169 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 SELENOHQ8IZQ5 122 aaKnown RBP1.58□□□□□ -2.16
VPS13A-210ENST00000471439 PBDC1Q9BVG4 233 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 PKIGQ9Y2B9 76 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 IGHV3-73A0A0B4J1V6 119 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 CRTAPO75718 401 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-210ENST00000471439 LTAP01374 205 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 PSMB9P28065 219 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 GLIPR1L1Q6UWM5 242 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 MRPL52Q86TS9 123 aaKnown RBP1.57□□□□□ -2.16
VPS13A-210ENST00000471439 LINC00269Q8N2A0 174 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 CCDC124Q96CT7 223 aaKnown RBP1.57□□□□□ -2.16
VPS13A-210ENST00000471439 FAM210AQ96ND0 272 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 TAS2R8Q9NYW2 309 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 TAS2R4Q9NYW5 299 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 AK3Q9UIJ7 227 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 SNX12Q9UMY4 172 aa1.57□□□□□ -2.16
VPS13A-210ENST00000471439 C7orf71A4D174 169 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 RD3LP0DJH9 198 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 CXCL3P19876 107 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 OR10J1P30954 320 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 RBM3P98179 157 aaKnown RBP1.56□□□□□ -2.16
VPS13A-210ENST00000471439 LHFPL5Q8TAF8 219 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 RNASEH2CQ8TDP1 164 aaKnown RBP1.56□□□□□ -2.16
VPS13A-210ENST00000471439 HIST1H2BAQ96A08 127 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 TREM1Q9NP99 234 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 C8orf4Q9NR00 106 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 GNG8Q9UK08 70 aa1.56□□□□□ -2.16
VPS13A-210ENST00000471439 UTP11Q9Y3A2 253 aaKnown RBP1.56□□□□□ -2.16
VPS13A-210ENST00000471439 LOC107984640A0A0U1RRK4 108 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 DUXBA0A1W2PPF3 345 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 CRYM-AS1A6NIL9 109 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 TRPC5OSA6NMA1 111 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 G3V3Q6 166 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 SLC25A5P05141 298 aaKnown RBP1.55□□□□□ -2.16
VPS13A-210ENST00000471439 LIMS3P0CW19 117 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 LIMS4P0CW20 117 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 HSPA13P48723 471 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 SMIM11AP58511 58 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 RPL37P61927 97 aaKnown RBP1.55□□□□□ -2.16
VPS13A-210ENST00000471439 UBE2BP63146 152 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 Q8NDZ9 215 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 LINC00526Q96FQ7 95 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 CARD19Q96LW7 228 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 SLC39A9Q9NUM3 307 aa1.55□□□□□ -2.16
VPS13A-210ENST00000471439 GVQW2A0A096LPI5 108 aaPredicted RBP1.54□□□□□ -2.16
VPS13A-210ENST00000471439 IGSF23A1L1A6 192 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 MEIS3P1A6NDR6 274 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 FAM25EA8MYX2 175 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 SLC25A20O43772 301 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 GZMBP10144 247 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 BCL2P10415 239 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 FGF6P10767 208 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 AKR1C4P17516 323 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 RNASE4P34096 147 aaKnown RBP1.54□□□□□ -2.16
VPS13A-210ENST00000471439 INPP1P49441 399 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 ERHP84090 104 aaKnown RBP1.54□□□□□ -2.16
VPS13A-210ENST00000471439 FAM19A2Q8N3H0 131 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 OR5C1Q8NGR4 320 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 TEX47Q8TBZ9 253 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 ARHGAP5-AS1Q96IT6 56 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 GINS4Q9BRT9 223 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 PLEKHJ1Q9NW61 149 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 TMEM56-RWDD3S4R434 201 aa1.54□□□□□ -2.16
VPS13A-210ENST00000471439 SMLR1H3BR10 107 aa1.53□□□□□ -2.16
VPS13A-210ENST00000471439 SNAPC5O75971 98 aa1.53□□□□□ -2.16
VPS13A-210ENST00000471439 SNCAP37840 140 aa1.53□□□□□ -2.16
VPS13A-210ENST00000471439 RPS20P60866 119 aaKnown RBP1.53□□□□□ -2.16
VPS13A-210ENST00000471439 CFAP126Q5VTH2 177 aa1.53□□□□□ -2.16
VPS13A-210ENST00000471439 PRNDQ9UKY0 176 aa1.53□□□□□ -2.16
VPS13A-210ENST00000471439 RBAKDNA6NC62 111 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 CORTO00230 105 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 SPINK1P00995 79 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 RPL5P46777 297 aaKnown RBP1.52□□□□□ -2.17
VPS13A-210ENST00000471439 RPL28P46779 137 aaKnown RBP1.52□□□□□ -2.17
VPS13A-210ENST00000471439 SULT1A2P50226 295 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 KRTAP12-1P59990 96 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 KRTAP20-2Q3LI61 65 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 CENPWQ5EE01 88 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 Q5VV11 94 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 FAM19A5Q7Z5A7 132 aaPredicted RBP1.52□□□□□ -2.17
VPS13A-210ENST00000471439 BOD1L2Q8IYS8 172 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 ZFAND2AQ8N6M9 145 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 MAFIPQ8WZ33 124 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 ODF3Q96PU9 254 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 FKBP11Q9NYL4 201 aa1.52□□□□□ -2.17
VPS13A-210ENST00000471439 SYNE1Q8NF91 8797 aaKnown RBP1.52□□□□□ -2.17
VPS13A-210ENST00000471439 B4DEV8 164 aa1.51□□□□□ -2.17
VPS13A-210ENST00000471439 M0R2P5 195 aa1.51□□□□□ -2.17
VPS13A-210ENST00000471439 FXYD1O00168 92 aa1.51□□□□□ -2.17
VPS13A-210ENST00000471439 GPR31O00270 319 aa1.51□□□□□ -2.17
VPS13A-210ENST00000471439 NPPAP01160 153 aa1.51□□□□□ -2.17
VPS13A-210ENST00000471439 HMGN1P05114 100 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms