RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 TIRAPP58753 221 aa5.33□□□□□ -1.56
USP48-206ENST00000464577 BLCAPP62952 87 aa5.33□□□□□ -1.56
USP48-206ENST00000464577 IGKV3-20P01619 116 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 IGHV4-38-2P0DP08 117 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 PSMB8P28062 276 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 NBL1P41271 181 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 COPS9Q8WXC6 57 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 DUX3Q96PT4 197 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 TMEM126AQ9H061 195 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 PRORYQ9H606 182 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 DCHS2Q6V1P9 2916 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 A8MTW9 85 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 COX7A2LO14548 114 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 CIRBPQ14011 172 aaKnown RBP5.32□□□□□ -1.56
USP48-206ENST00000464577 MEIG1Q5JSS6 88 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 CEMP1Q6PRD7 247 aaPredicted RBP5.32□□□□□ -1.56
USP48-206ENST00000464577 Q6ZSV7 163 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 DNAJC30Q96LL9 226 aa5.32□□□□□ -1.56
USP48-206ENST00000464577 SPTBN2O15020 2390 aa5.31□□□□□ -1.56
USP48-206ENST00000464577 HRNRQ86YZ3 2850 aaPredicted RBP5.31□□□□□ -1.56
USP48-206ENST00000464577 UCNP55089 124 aa5.31□□□□□ -1.56
USP48-206ENST00000464577 LINC01587Q99440 93 aa5.31□□□□□ -1.56
USP48-206ENST00000464577 CITED2Q99967 270 aaPredicted RBP5.31□□□□□ -1.56
USP48-206ENST00000464577 PIMREGQ9BSJ6 248 aa5.31□□□□□ -1.56
USP48-206ENST00000464577 PPDPFQ9H3Y8 114 aa5.31□□□□□ -1.56
USP48-206ENST00000464577 IGHV4-61A0A0C4DH41 118 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 IGLV5-39A0A0G2JS06 123 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 A8MZ25 164 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 RBMY1A1P0DJD3 496 aaKnown RBP5.3□□□□□ -1.56
USP48-206ENST00000464577 RBMY1CP0DJD4 496 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 NPC2P61916 151 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 RBMY1FQ15415 496 aaKnown RBP5.3□□□□□ -1.56
USP48-206ENST00000464577 RNASE13Q5GAN3 156 aaKnown RBP5.3□□□□□ -1.56
USP48-206ENST00000464577 SMIM20Q8N5G0 67 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LINC00308Q8TCZ7 52 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 TRACP01848 142 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 ATP5G1P05496 136 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LORP23490 312 aaPredicted RBP5.3□□□□□ -1.56
USP48-206ENST00000464577 PROK1P58294 105 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 ZNF415Q09FC8 603 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LY6DQ14210 128 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LCE2CQ5TA81 110 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 SHISA2Q6UWI4 295 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 SDIM1Q6ZPB5 146 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LINC00643Q86TS7 51 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 LINC00467Q9BRT7 94 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 CDKN2A-AS1Q9UH64 79 aa5.3□□□□□ -1.56
USP48-206ENST00000464577 ZNF292O60281 2723 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.29□□□□□ -1.56
USP48-206ENST00000464577 IGHV3-73A0A0B4J1V6 119 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 IGKV2-29A2NJV5 120 aaPredicted RBP5.29□□□□□ -1.56
USP48-206ENST00000464577 IGHV3-53P01767 116 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 HERV-K104P63124 156 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 FAM222AQ5U5X8 452 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 FAM19A3Q7Z5A8 133 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 C10orf105Q8TEF2 133 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 CHCHD5Q9BSY4 110 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 CACNA1BQ00975 2339 aa5.29□□□□□ -1.56
USP48-206ENST00000464577 PRRC2AP48634 2157 aaKnown RBP5.29□□□□□ -1.56
USP48-206ENST00000464577 HERVK_113P63121 156 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 DAND5Q8N907 189 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 DMXL1Q9Y485 3027 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 LRBAP50851 2863 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 ATMQ13315 3056 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 FAM236AA0A1B0GUQ0 79 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 FAM236BA0A1B0GV22 79 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 CXCL5P42830 114 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 BEAN1Q3B7T3 259 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 Q6ZSN1 163 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 PEMTQ9UBM1 199 aa5.28□□□□□ -1.56
USP48-206ENST00000464577 TLN1Q9Y490 2541 aaKnown RBP5.28□□□□□ -1.56
USP48-206ENST00000464577 MSMBP08118 114 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 SYNJ2BPP57105 145 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 Q9H8V8 135 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 CSMD1Q96PZ7 3565 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 ABCA2Q9BZC7 2435 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 KNCNA6PVL3 124 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 RS1O15537 224 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 C3orf22Q8N5N4 141 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.27□□□□□ -1.57
USP48-206ENST00000464577 SMCR5Q8TEV8 140 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 DUX5Q96PT3 197 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 Q9UF83 564 aa5.27□□□□□ -1.57
USP48-206ENST00000464577 IGHV3OR16-12A0A075B7B8 117 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 RBMY1BA6NDE4 496 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 RBMY1EA6NEQ0 496 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 SMIM1B2RUZ4 78 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 RBMY1DP0C7P1 496 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 INAFM2P0DMQ5 153 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 DAZ2Q13117 558 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 LINC00242Q5T6M2 205 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 DGAT2L7PQ6IED9 249 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 SOSTDC1Q6X4U4 206 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 DAZ4Q86SG3 579 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 C5orf38Q86SI9 138 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 C11orf72Q8NBR9 251 aa5.26□□□□□ -1.57
USP48-206ENST00000464577 ZNF625Q96I27 306 aaPredicted RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 DAZ3Q9NR90 486 aaKnown RBP5.26□□□□□ -1.57
USP48-206ENST00000464577 UQCRQO14949 82 aa5.25□□□□□ -1.57
USP48-206ENST00000464577 BAALC-AS2P0C853 105 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms