RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 LINC00269Q8N2A0 174 aa15.14■□□□□ 0.01
PTPN4-208ENST00000460289 A0A1B0GUV1 79 aa15.13■□□□□ 0.01
PTPN4-208ENST00000460289 UBE2L6O14933 153 aa15.12■□□□□ 0.01
PTPN4-208ENST00000460289 AMTP48728 403 aa15.12■□□□□ 0.01
PTPN4-208ENST00000460289 C14orf177Q52M58 125 aa15.12■□□□□ 0.01
PTPN4-208ENST00000460289 ISOC2Q96AB3 205 aa15.12■□□□□ 0.01
PTPN4-208ENST00000460289 NAT8Q9UHE5 227 aa15.12■□□□□ 0.01
PTPN4-208ENST00000460289 C9JQL5 133 aa15.11■□□□□ 0.01
PTPN4-208ENST00000460289 RPL23P62829 140 aaKnown RBP15.11■□□□□ 0.01
PTPN4-208ENST00000460289 RPL39LQ96EH5 51 aaKnown RBP15.11■□□□□ 0.01
PTPN4-208ENST00000460289 TMEM191AQ9H0A3 160 aa15.11■□□□□ 0.01
PTPN4-208ENST00000460289 V9GYV3 84 aa15.11■□□□□ 0.01
PTPN4-208ENST00000460289 EPM2AB3EWF7 344 aa15.1■□□□□ 0.01
PTPN4-208ENST00000460289 REG3AQ06141 175 aa15.1■□□□□ 0.01
PTPN4-208ENST00000460289 DEFB104AQ8WTQ1 72 aa15.1■□□□□ 0.01
PTPN4-208ENST00000460289 NCR2O95944 276 aa15.09■□□□□ 0.01
PTPN4-208ENST00000460289 SRSF3P84103 164 aaKnown RBP15.09■□□□□ 0.01
PTPN4-208ENST00000460289 ADIRFQ15847 76 aa15.09■□□□□ 0.01
PTPN4-208ENST00000460289 CLPSL2Q6UWE3 100 aa15.09■□□□□ 0.01
PTPN4-208ENST00000460289 C20orf203Q8NBC4 194 aa15.09■□□□□ 0.01
PTPN4-208ENST00000460289 RIGQ13278 110 aa15.08■□□□□ 0
PTPN4-208ENST00000460289 NAT8BQ9UHF3 227 aa15.08■□□□□ 0
PTPN4-208ENST00000460289 TRAV8-4A0A0B4J246 113 aa15.07■□□□□ 0
PTPN4-208ENST00000460289 TRBV6-5A0A0K0K1A5 114 aa15.07■□□□□ 0
PTPN4-208ENST00000460289 SDHAF1A6NFY7 115 aa15.07■□□□□ 0
PTPN4-208ENST00000460289 HLA-DQA1P01909 254 aa15.07■□□□□ 0
PTPN4-208ENST00000460289 NUP35Q8NFH5 326 aa15.07■□□□□ 0
PTPN4-208ENST00000460289 IGLV4-60A0A075B6I1 120 aa15.06■□□□□ 0
PTPN4-208ENST00000460289 I3L3M4 83 aa15.05■□□□□ -0
PTPN4-208ENST00000460289 FAM30AQ9NZY2 134 aa15.05■□□□□ -0
PTPN4-208ENST00000460289 USP17L23D6RBM5 183 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 H7C423 109 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 APCSP02743 223 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 RAB4AP20338 218 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 PMCHP20382 165 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 MRAP2Q96G30 205 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 ST20Q9HBF5 79 aa15.04■□□□□ -0
PTPN4-208ENST00000460289 AMMECR1LQ6DCA0 310 aa15.03■□□□□ -0
PTPN4-208ENST00000460289 KRTAP26-1Q6PEX3 210 aa15.03■□□□□ -0
PTPN4-208ENST00000460289 RNF185Q96GF1 192 aa15.03■□□□□ -0
PTPN4-208ENST00000460289 IGLV10-54A0A075B6I4 117 aa15.02■□□□□ -0
PTPN4-208ENST00000460289 SMR3BP02814 79 aaPredicted RBP15.02■□□□□ -0
PTPN4-208ENST00000460289 Q6ZSA8 131 aa15.02■□□□□ -0
PTPN4-208ENST00000460289 AMN1Q8IY45 258 aa15.02■□□□□ -0
PTPN4-208ENST00000460289 SMIM27A0A1W2PRY6 76 aa15.01□□□□□ -0.01
PTPN4-208ENST00000460289 HAMPP81172 84 aa15.01□□□□□ -0.01
PTPN4-208ENST00000460289 Q5VSD8 79 aa15.01□□□□□ -0.01
PTPN4-208ENST00000460289 FAM229AH3BQW9 127 aa15□□□□□ -0.01
PTPN4-208ENST00000460289 GAS8-AS1O95177 125 aa15□□□□□ -0.01
PTPN4-208ENST00000460289 PPP1R17O96001 155 aa15□□□□□ -0.01
PTPN4-208ENST00000460289 RAB14P61106 215 aa15□□□□□ -0.01
PTPN4-208ENST00000460289 LINC01620Q4KN68 170 aa15□□□□□ -0.01
PTPN4-208ENST00000460289 A0A1B0GW15 77 aa14.99□□□□□ -0.01
PTPN4-208ENST00000460289 DGAT2L7PQ6IED9 249 aa14.99□□□□□ -0.01
PTPN4-208ENST00000460289 CLRN3Q8NCR9 226 aa14.99□□□□□ -0.01
PTPN4-208ENST00000460289 DNAH8Q96JB1 4490 aa14.98□□□□□ -0.01
PTPN4-208ENST00000460289 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.98□□□□□ -0.01
PTPN4-208ENST00000460289 IGKV2-29A2NJV5 120 aaPredicted RBP14.98□□□□□ -0.01
PTPN4-208ENST00000460289 PRSS1P07477 247 aa14.98□□□□□ -0.01
PTPN4-208ENST00000460289 POLR2KP53803 58 aaKnown RBP14.98□□□□□ -0.01
PTPN4-208ENST00000460289 RNASEKQ6P5S7 137 aaKnown RBP14.98□□□□□ -0.01
PTPN4-208ENST00000460289 FAT1Q14517 4588 aa14.97□□□□□ -0.01
PTPN4-208ENST00000460289 TRBV27A0A0K0K1C4 114 aa14.97□□□□□ -0.01
PTPN4-208ENST00000460289 FGF6P10767 208 aa14.97□□□□□ -0.01
PTPN4-208ENST00000460289 RPS10P46783 165 aaKnown RBP14.97□□□□□ -0.01
PTPN4-208ENST00000460289 ZNF25P17030 456 aaPredicted RBP14.96□□□□□ -0.01
PTPN4-208ENST00000460289 BTF3L4Q96K17 158 aa14.96□□□□□ -0.01
PTPN4-208ENST00000460289 VCYO14598 125 aa14.95□□□□□ -0.02
PTPN4-208ENST00000460289 TSHBP01222 138 aa14.95□□□□□ -0.02
PTPN4-208ENST00000460289 CAMPP49913 170 aa14.95□□□□□ -0.02
PTPN4-208ENST00000460289 FAM104BQ5XKR9 115 aa14.95□□□□□ -0.02
PTPN4-208ENST00000460289 TMEM242Q9NWH2 141 aa14.95□□□□□ -0.02
PTPN4-208ENST00000460289 S100A8P05109 93 aa14.94□□□□□ -0.02
PTPN4-208ENST00000460289 ESDP10768 282 aa14.94□□□□□ -0.02
PTPN4-208ENST00000460289 TMEM101Q96IK0 257 aa14.94□□□□□ -0.02
PTPN4-208ENST00000460289 IGKV3OR2-268A0A0C4DH90 116 aa14.93□□□□□ -0.02
PTPN4-208ENST00000460289 LINC00862A6NCI5 91 aa14.93□□□□□ -0.02
PTPN4-208ENST00000460289 SMKR1H3BMG3 65 aa14.93□□□□□ -0.02
PTPN4-208ENST00000460289 INAFM2P0DMQ5 153 aa14.92□□□□□ -0.02
PTPN4-208ENST00000460289 SUMO2P61956 95 aaKnown RBP14.92□□□□□ -0.02
PTPN4-208ENST00000460289 MRPL51Q4U2R6 128 aaKnown RBP14.92□□□□□ -0.02
PTPN4-208ENST00000460289 PPP1R2P9O14990 202 aa14.91□□□□□ -0.02
PTPN4-208ENST00000460289 NRACQ8N912 160 aa14.91□□□□□ -0.02
PTPN4-208ENST00000460289 C9orf163Q8N9P6 203 aa14.91□□□□□ -0.02
PTPN4-208ENST00000460289 CHAC1Q9BUX1 264 aa14.91□□□□□ -0.02
PTPN4-208ENST00000460289 hDV102S1A0JD36 115 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 GAGE12HA6NDE8 117 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 F8W036 122 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 FCER1GP30273 86 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 HBBP68871 147 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 CFAP161Q6P656 301 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 OR5A1Q8NGJ0 315 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 KIR2DL4Q99706 377 aa14.9□□□□□ -0.02
PTPN4-208ENST00000460289 C7orf77A4D0Y5 90 aa14.89□□□□□ -0.03
PTPN4-208ENST00000460289 CKS2P33552 79 aa14.89□□□□□ -0.03
PTPN4-208ENST00000460289 PNRC1Q12796 327 aaPredicted RBP14.89□□□□□ -0.03
PTPN4-208ENST00000460289 MRPL54Q6P161 138 aaKnown RBP14.89□□□□□ -0.03
PTPN4-208ENST00000460289 SCXQ7RTU7 201 aa14.89□□□□□ -0.03
PTPN4-208ENST00000460289 MRPL52Q86TS9 123 aaKnown RBP14.89□□□□□ -0.03
PTPN4-208ENST00000460289 CHCHD10Q8WYQ3 142 aaPredicted RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms